jdoughertyii / PyVCF
A Variant Call Format reader for Python.
☆76Updated 10 years ago
Alternatives and similar repositories for PyVCF
Users that are interested in PyVCF are comparing it to the libraries listed below
Sorting:
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Efficient handling of FASTQ files from Python☆51Updated 8 months ago
- Simple FASTQ quality assessment using Python☆108Updated 3 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- ☆78Updated 11 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 7 months ago
- 10x Genomics Reads Simulator☆45Updated last year
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 4 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- A 3'-end adapter contaminant trimmer☆94Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆121Updated 2 weeks ago
- An awk-like VCF parser☆56Updated last year
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated 2 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆73Updated this week