nh13 / DWGSIMLinks
Whole Genome Simulator for Next-Generation Sequencing
☆97Updated 6 months ago
Alternatives and similar repositories for DWGSIM
Users that are interested in DWGSIM are comparing it to the libraries listed below
Sorting:
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- NEAT read simulation tools☆98Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Documentation archive for GATK tools and workflows☆85Updated 5 years ago
- VarDict☆200Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- ABRA2☆92Updated 2 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- ☆126Updated 3 weeks ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆168Updated 5 years ago
- accurate LiftOver tool for new genome assemblies☆126Updated 9 months ago
- ☆120Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Long-read mock community experiments☆105Updated 3 years ago
- Structural Variant Identification Method using Long Reads☆172Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- Same species annotation lift over pipeline.☆97Updated last year