fbreitwieser / bamcovLinks
Quickly calculate and visualize sequence coverage in alignment files
☆100Updated 6 years ago
Alternatives and similar repositories for bamcov
Users that are interested in bamcov are comparing it to the libraries listed below
Sorting:
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ☆79Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- Plotting tools for nanopore methylation data☆94Updated 3 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 5 months ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆104Updated 9 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- ☆35Updated 2 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago