fbreitwieser / bamcovLinks
Quickly calculate and visualize sequence coverage in alignment files
☆100Updated 6 years ago
Alternatives and similar repositories for bamcov
Users that are interested in bamcov are comparing it to the libraries listed below
Sorting:
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 3 weeks ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- ☆79Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Plotting tools for nanopore methylation data☆93Updated 3 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Synteny Imager☆64Updated 3 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Simple pileup-based variant caller☆93Updated 6 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago
- Assembly statistic visualisation☆90Updated last year
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 11 months ago