lh3 / wgsimLinks
Reads simulator
☆280Updated 3 years ago
Alternatives and similar repositories for wgsim
Users that are interested in wgsim are comparing it to the libraries listed below
Sorting:
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 8 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆250Updated last year
- Bayesian haplotype-based mutation calling☆313Updated 4 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆269Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- VarDict☆198Updated last year
- Read trimming tool for Illumina NGS data.☆139Updated 10 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆170Updated 5 years ago
- Toolset for SV simulation, comparison and filtering☆389Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- TransDecoder source☆292Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- ☆279Updated 5 months ago
- Structural variation and indel detection by local assembly☆247Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆304Updated last year
- C++ API & command-line toolkit for working with BAM data☆425Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆475Updated 2 weeks ago
- lumpy: a general probabilistic framework for structural variant discovery☆331Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆230Updated last week
- BEDOPS: high-performance genomic feature operations☆343Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated 2 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated last month
- A tool set for short variant discovery in genetic sequence data.☆199Updated 4 years ago
- Next generation sequencing reads de novo assembler.☆234Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆225Updated last month
- An overview of all nanopack tools☆260Updated 2 years ago