bioinform / varsimLinks
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
☆90Updated last year
Alternatives and similar repositories for varsim
Users that are interested in varsim are comparing it to the libraries listed below
Sorting:
- Assembly Based ReAligner☆74Updated 7 years ago
- Platypus Variant Caller☆108Updated last year
- Read visualizer for structural variants☆84Updated 7 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated last week
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- ☆96Updated 3 years ago
- C++ Library to parse Illumina InterOp files☆80Updated 2 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- ABRA2☆95Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated last week
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- ☆55Updated 5 years ago
- ☆91Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- ☆78Updated 11 years ago