bioinform / varsimLinks
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
☆84Updated 8 months ago
Alternatives and similar repositories for varsim
Users that are interested in varsim are comparing it to the libraries listed below
Sorting:
- Read visualizer for structural variants☆84Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆54Updated 9 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- small RNA analysis from NGS data☆37Updated 9 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- ☆91Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- NEAT read simulation tools☆98Updated 3 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- An awk-like VCF parser☆56Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Platypus Variant Caller☆108Updated 11 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago