zstephens / neat-genreads
NEAT read simulation tools
☆98Updated 2 years ago
Alternatives and similar repositories for neat-genreads:
Users that are interested in neat-genreads are comparing it to the libraries listed below
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 5 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- ABRA2☆92Updated 2 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- ☆120Updated 5 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- ☆82Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated last week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Read visualizer for structural variants☆83Updated 6 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆110Updated 2 weeks ago
- ☆78Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Data and information about the Polaris study☆53Updated 5 years ago