zstephens / neat-genreadsLinks
NEAT read simulation tools
☆101Updated 3 years ago
Alternatives and similar repositories for neat-genreads
Users that are interested in neat-genreads are comparing it to the libraries listed below
Sorting:
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- ☆122Updated 5 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- The Platinum Genomes Truthset☆89Updated 8 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated 3 weeks ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆83Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆109Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- A tool for profiling long STRs from short reads☆104Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Data and information about the Polaris study☆55Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ABRA2☆95Updated 3 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 6 months ago