An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
☆33Oct 30, 2026Updated this week
Alternatives and similar repositories for LAPIS
Users that are interested in LAPIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RhyDB – High-performance analytical database for sequence alignment data☆20Oct 23, 2026Updated last week
- An open-source software package to power microbial genomic databases☆75Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool for exploring large trees in the browser☆134Oct 7, 2026Updated 3 weeks ago
- Javascript library for manipulating phylogenetic trees☆11May 30, 2025Updated last year
- A web platform to detect and analyze variants of SARS-CoV-2☆60Oct 12, 2026Updated 2 weeks ago
- Svelte action to emit swipe and tap events, ported from react-swipeable☆16Jul 15, 2024Updated 2 years ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 10 months ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Nextstrain build for mpox virus☆50Oct 19, 2026Updated last week
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated 3 weeks ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Svelte carousel image gallery component with thumbnail support 🖼, ported from react-image-gallery☆21Mar 4, 2023Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆16Jul 21, 2026Updated 3 months ago
- Lightweight genome browser for microbial genomes☆11Sep 24, 2026Updated last month
- PCR primer scheme definitions☆12Sep 8, 2026Updated last month
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- ☆13Oct 23, 2026Updated last week
- Consensus sequences for each Pango lineage☆25Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- baltic - Backronymed Adaptable Lightweight Tree vIsualisation Code for molecular phylogeny manipulation, analysis and visualisation.☆133Updated this week
- ☆26Jul 25, 2026Updated 3 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…