GenSpectrum / LAPIS

Related projects ⓘ

Alternatives and complementary repositories for LAPIS

• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆27Updated this week
• cambiotraining / sars-cov-2-genomics
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis
  ☆14Updated 3 months ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆21Updated 11 months ago
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated 8 months ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆32Updated this week
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆24Updated 4 months ago
• mpxv-lineages / lineage-designation
  Official place for proposals and details around monkeypox virus lineage designations
  ☆23Updated last week
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆29Updated last month
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆27Updated this week
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆21Updated this week
• jguhlin / sfasta
  sfasta
  ☆34Updated 3 months ago
• dorbarker / voc-identify
  Identify Variants of Concern from metagenomic samples of SARS-CoV-2
  ☆12Updated 3 years ago
• chrisruis / bammix
  Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures
  ☆13Updated 2 years ago
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆54Updated last year
• jlumpe / gambit
  A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
  ☆29Updated 3 months ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆15Updated last year
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆22Updated last year
• chienchi / amplicon_coverage_plot
  interactive barplot for amplicon sequencing
  ☆13Updated last year
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated last month
• ktmeaton / ncov-recombinant
  Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
  ☆18Updated last year
• theiagen / public_health_bacterial_genomics
  ☆27Updated last year
• sdellicour / seraphim
  R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…
  ☆29Updated 3 weeks ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆24Updated last month
• pathoplexus / pathoplexus
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
  ☆28Updated this week
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆34Updated 3 weeks ago
• jhuapl-bio / taxtriage
  TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…
  ☆30Updated last week
• snake-flu / datafunk
  Miscellaneous data manipulation tools
  ☆9Updated last year
• lenaschimmel / sc2rf
  SARS-Cov-2 Recombinant Finder for fasta sequences
  ☆48Updated 2 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated 9 months ago
• snake-flu / type_variants
  ☆8Updated 3 years ago