Alternatives and similar repositories for LAPIS

Users that are interested in LAPIS are comparing it to the libraries listed below

• chanzuckerberg / galago
  Interpretation aids for genomic epidemiology
  ☆9Updated 7 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated 3 weeks ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆18Updated 8 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆38Updated last month
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated 3 weeks ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆35Updated 3 years ago
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆25Updated this week
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆26Updated 10 months ago
• MDU-PHL / pango-collapse
  app to collapse Pango lineages for reporting
  ☆12Updated last year
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆27Updated this week
• cambiotraining / sars-cov-2-genomics
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis
  ☆14Updated 9 months ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated this week
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated last year
• ktmeaton / ncov-recombinant
  Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
  ☆18Updated 2 years ago
• iqbal-lab-org / viridian
  ☆21Updated 3 months ago
• bede / deacon
  Fast (host) DNA sequence filtering
  ☆33Updated last week
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 7 months ago
• dorbarker / voc-identify
  Identify Variants of Concern from metagenomic samples of SARS-CoV-2
  ☆13Updated 3 years ago
• yatisht / strain_phylogenetics
  Tools for analyzing and comparing SARS-CoV-2 phylogenies
  ☆9Updated 4 years ago
• nextstrain / zika-tutorial
  Data and scripts for Zika virus tutorial
  ☆10Updated 6 months ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆38Updated last month
• corneliusroemer / pango-sequences
  Consensus sequences for each Pango lineage
  ☆21Updated this week
• dhelekal / CaveDive
  ☆17Updated 11 months ago
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆21Updated 5 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• chrisruis / bammix
  Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures
  ☆13Updated 3 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆33Updated this week
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆68Updated 4 months ago
• sdwfrost / gbmunge
  Munge GenBank files into FASTA and tab-separated metadata
  ☆14Updated last year