An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
☆33Sep 18, 2026Updated this week
Alternatives and similar repositories for LAPIS
Users that are interested in LAPIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RhyDB – High-performance analytical database for sequence alignment data☆19Updated this week
- An open-source software package to power microbial genomic databases☆74Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for exploring large trees in the browser☆134Sep 4, 2026Updated 2 weeks ago
- A web platform to detect and analyze variants of SARS-CoV-2☆61Aug 25, 2026Updated 3 weeks ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 9 months ago
- Svelte action to emit swipe and tap events, ported from react-swipeable☆16Jul 15, 2024Updated 2 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 9 months ago
- Nextstrain build for mpox virus☆50Updated this week
- Svelte carousel image gallery component with thumbnail support 🖼, ported from react-image-gallery☆21Mar 4, 2023Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆45Jul 2, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆129Updated this week
- Consensus sequences for each Pango lineage☆24Jun 27, 2025Updated last year
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆29Aug 26, 2026Updated 3 weeks ago
- Bayesian network toolkit, with applications for phylogenetic analysis☆11Aug 25, 2026Updated 3 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated 10 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆48Updated this week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nextstrain build for avian influenza viruses☆29Updated this week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- ☆30Mar 6, 2025Updated last year
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last month
- Viral (meta)-genome assembly pipeline.☆23Sep 8, 2026Updated last week
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- ☆28Aug 2, 2023Updated 3 years ago
- Quality control for phylogenetic analyses☆13Aug 31, 2026Updated 2 weeks ago
- analysis of SARS-CoV-2 sequence submitted to Genbank on Dec-28-2019☆12Jan 22, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A Cursor type for use with rust-postgres☆14May 31, 2023Updated 3 years ago
- ☆12Feb 15, 2023Updated 3 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 3 weeks ago
- A simple pipeline for bacterial assembly and quality control☆17Updated this week
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 2 months ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago