CDCgov / aquascopeLinks
☆20Updated 6 months ago
Alternatives and similar repositories for aquascope
Users that are interested in aquascope are comparing it to the libraries listed below
Sorting:
- Influenza data pipeline to automate genotyping assignment☆37Updated 4 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- Interpretative standards for AMR genotypes☆25Updated 3 weeks ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- Viral (meta)-genome assembly pipeline.☆17Updated last month
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆18Updated 2 weeks ago
- UPHL's Reference Free Pipeline☆26Updated last week
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆21Updated 5 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 2 weeks ago
- ☆18Updated 6 months ago
- Metagenomic Analysis in Real Time☆28Updated 3 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Inferring global and local strict molecular clocks using root-to-tip regression☆13Updated 4 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated last week
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- Bacterial surveillance pipeline.☆26Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆56Updated last week
- Gene-flank analysis tool☆30Updated 9 months ago