CDCgov / aquascope
☆20Updated 3 weeks ago
Alternatives and similar repositories for aquascope:
Users that are interested in aquascope are comparing it to the libraries listed below
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 2 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆13Updated 2 weeks ago
- ☆16Updated 3 weeks ago
- UPHL's Reference Free Pipeline☆26Updated 2 weeks ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Bacterial surveillance pipeline.☆24Updated 2 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆33Updated last week
- Interpretative standards for AMR genotypes☆18Updated 9 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- ☆26Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Metagenomic Analysis in Real Time☆24Updated 3 weeks ago
- SC2 variant detection and composition pipeline☆17Updated last year
- Influenza data pipeline to automate genotyping assignment☆31Updated 2 months ago
- Infer transmission clusters from SNP and timing data☆14Updated 4 years ago
- A set of scripts for calculating pairwise SNP distance☆40Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆16Updated last week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- Read contamination removal☆25Updated last year
- Recombination-free trees☆58Updated last month
- ☆17Updated 2 weeks ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated this week