theosanderson / taxoniumLinks
A tool for exploring large trees in the browser
☆117Updated this week
Alternatives and similar repositories for taxonium
Users that are interested in taxonium are comparing it to the libraries listed below
Sorting:
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last month
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆57Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Efficient phylogenetic clustering of viral sequences☆89Updated this week
- ☆50Updated 3 years ago
- resources for bioinformatics education☆88Updated 5 months ago
- Ultrafast Sample Placement on Existing Trees☆134Updated last month
- Bioinformatics Pipeline and Visualization resources☆58Updated last year
- Nextstrain build for avian influenza viruses☆27Updated 3 weeks ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆115Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Visualization of the pan-genome output by panX☆65Updated 4 months ago
- SEER, reimplemented in python 🐍🔮☆125Updated 5 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 4 months ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- ☆74Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆63Updated last month
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆36Updated 2 weeks ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆35Updated 3 weeks ago
- Utility to alias and dealias pango lineages☆23Updated last year
- Programmatically interact with the GISAID database.☆78Updated 2 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Updated 3 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 2 weeks ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆109Updated last month