theosanderson / taxonium
A tool for exploring large trees in the browser
☆108Updated last week
Alternatives and similar repositories for taxonium:
Users that are interested in taxonium are comparing it to the libraries listed below
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆100Updated this week
- Ultrafast Sample Placement on Existing Trees☆124Updated last month
- ☆48Updated 3 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Bioinformatics Pipeline and Visualization resources☆55Updated 7 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆108Updated this week
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated 11 months ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆101Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Efficient phylogenetic tree inference for massive taxonomic datasets☆116Updated last week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆54Updated 2 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated 3 weeks ago
- SEER, reimplemented in python 🐍🔮☆120Updated 5 months ago
- resources for bioinformatics education☆81Updated last year
- Efficient calculation of phylogenetic distance matrices.☆47Updated 5 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆55Updated 2 months ago
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 2 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- Programmatically interact with the GISAID database.☆73Updated 6 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- Collection template and associated materials for SARS-CoV-2 metadata☆35Updated last year
- Efficient phylogenetic clustering of viral sequences☆82Updated last year
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆93Updated 2 months ago
- Browser-based utility for phylogenetic tree visualisation.☆38Updated last year
- Antibiotic resistance prediction in minutes☆107Updated 4 months ago
- Massively parallel phylogenetic placement of genetic sequences☆82Updated 2 years ago