theosanderson / taxoniumLinks
A tool for exploring large trees in the browser
☆117Updated last week
Alternatives and similar repositories for taxonium
Users that are interested in taxonium are comparing it to the libraries listed below
Sorting:
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last week
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Efficient phylogenetic clustering of viral sequences☆89Updated 3 weeks ago
- resources for bioinformatics education☆94Updated 6 months ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆116Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆58Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆135Updated last week
- ☆50Updated 3 years ago
- SEER, reimplemented in python 🐍🔮☆125Updated 6 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 5 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆109Updated last month
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 2 months ago
- Nextstrain build for avian influenza viruses☆27Updated last week
- Visualization of the pan-genome output by panX☆65Updated 5 months ago
- Programmatically interact with the GISAID database.☆78Updated 3 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Updated last year
- Efficient phylogenetic tree inference for massive taxonomic datasets☆132Updated 7 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 weeks ago
- Reconstruction of transmission trees using genomic data☆65Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 7 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 3 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆123Updated 3 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated 3 months ago