A tool for exploring large trees in the browser
☆133Jun 14, 2026Updated 3 weeks ago
Alternatives and similar repositories for taxonium
Users that are interested in taxonium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last month
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated last year
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆31Jul 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An open-source software package to power microbial genomic databases☆73Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated last month
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Nextstrain build for avian influenza viruses☆28Updated this week
- High-performance analytical database for sequence alignment data☆19Updated this week
- ☆51Mar 11, 2022Updated 4 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- snipit: summarise snps relative to your reference sequence☆178Jan 13, 2026Updated 5 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 7 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆42Jul 2, 2026Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 3 months ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆125Jun 19, 2026Updated 2 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jun 12, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Updated this week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆144Jun 10, 2026Updated 3 weeks ago
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 3 months ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated 11 months ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆57Jul 2, 2026Updated last week
- The ARTIC fieldbioinformatics pipeline☆134Updated this week
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated last year
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Jul 2, 2026Updated last week
- Nextstrain build for mpox virus☆50Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆77Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 4 months ago
- Scalable relaxed clock phylogenetic dating☆28Updated this week
- Main development repository for SpreadGL☆22Jun 18, 2026Updated 3 weeks ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago