Alternatives and similar repositories for seasonal-flu

Users that are interested in seasonal-flu are comparing it to the libraries listed below

• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated last year
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆50Updated this week
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆78Updated last month
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated last month
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆86Updated 4 months ago
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆89Updated last year
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆64Updated last year
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆64Updated 3 months ago
• sdellicour / seraphim
  R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)
  ☆34Updated 3 weeks ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆111Updated 2 weeks ago
• W-L / ProblematicSites_SARS-CoV2
  ☆49Updated 3 years ago
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆25Updated last year
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated last year
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 7 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆88Updated 2 months ago
• Arcadia-Science / metagenomics
  A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
  ☆37Updated 2 years ago
• nextstrain / nextclade_data
  Datasets for https://github.com/nextstrain/nextclade
  ☆38Updated this week
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 3 weeks ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 4 months ago
• matdoering / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆28Updated 2 months ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆124Updated 4 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 2 weeks ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 3 months ago
• borenstein-lab / burrito
  A visualization tool for exploratory data analysis of metagenomic data
  ☆37Updated 3 years ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 3 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆44Updated 2 years ago
• PathoScope / PathoScope
  Pathoscope: Species identification and strain attribution with unassembled sequencing data
  ☆58Updated 6 years ago