nextstrain / seasonal-fluLinks
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
☆53Updated this week
Alternatives and similar repositories for seasonal-flu
Users that are interested in seasonal-flu are comparing it to the libraries listed below
Sorting:
- Programmatically interact with the GISAID database.☆78Updated 2 months ago
 - Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
 - ☆50Updated 3 years ago
 - Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
 - Nextstrain build for avian influenza viruses☆27Updated 3 weeks ago
 - resources for bioinformatics education☆93Updated 5 months ago
 - Datasets for https://github.com/nextstrain/nextclade☆41Updated this week
 - serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
 - baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last month
 - R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆36Updated 3 weeks ago
 - Materials and tutorials for the 2020 ISB Microbiome Course☆31Updated 2 years ago
 - Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated 2 years ago
 - Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated last month
 - Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
 - ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
 - 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆87Updated this week
 - Nextstrain build for mpox virus☆50Updated this week
 - viral-ngs: complete pipelines☆67Updated last week
 - Efficient phylogenetic clustering of viral sequences☆89Updated this week
 - SEER, reimplemented in python 🐍🔮☆125Updated 5 months ago
 - MEGAN Community Edition☆72Updated last year
 - ☆75Updated 4 years ago
 - ☆74Updated last year
 - Creating plasmid maps inside ggplot.☆89Updated 2 months ago
 - A catalogue of available long read sequencing data analysis tools☆80Updated last month
 - Visualization of the pan-genome output by panX☆65Updated 4 months ago
 - Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆29Updated last year
 - A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆20Updated 2 years ago
 - Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆122Updated 2 weeks ago
 - Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year