Scripts. config, and snakefiles for seasonal-flu nextstrain builds
☆59Mar 20, 2026Updated last week
Alternatives and similar repositories for seasonal-flu
Users that are interested in seasonal-flu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextstrain build for avian influenza viruses☆27Feb 13, 2026Updated last month
- Nextstrain build for Zika virus☆10Dec 19, 2025Updated 3 months ago
- Umbrella documentation project for Nextstrain☆18Mar 17, 2026Updated last week
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 6 months ago
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Mar 17, 2026Updated last week
- Nextstrain build for dengue virus☆13Mar 6, 2026Updated 3 weeks ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 6 months ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 5 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Mar 18, 2026Updated last week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Web app for visualizing pathogen evolution☆307Mar 17, 2026Updated last week
- Nextstrain build for mpox virus☆50Mar 16, 2026Updated last week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 3 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆22Mar 12, 2026Updated 2 weeks ago
- ☆15Jan 10, 2023Updated 3 years ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- RethinkDB database to support real-time virus analysis☆35Feb 19, 2026Updated last month
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 3 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆117Mar 12, 2026Updated 2 weeks ago
- ☆21Jan 23, 2026Updated 2 months ago
- Nextflow workflow template repository☆20Mar 12, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆43Oct 2, 2023Updated 2 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆82Mar 2, 2026Updated 3 weeks ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated 11 months ago