Alternatives and similar repositories for seasonal-flu

Users that are interested in seasonal-flu are comparing it to the libraries listed below

• W-L / ProblematicSites_SARS-CoV2
  ☆49Updated 3 years ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆75Updated 2 months ago
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆46Updated last week
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆122Updated 2 weeks ago
• sanger-pathogens / pathogen-informatics-training
  ☆70Updated 4 years ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆106Updated last month
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆103Updated last month
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆38Updated last month
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated 2 years ago
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆83Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• jts / ncov-tools
  Small collection of tools for performing quality control on coronavirus sequencing data and genomes
  ☆48Updated last year
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆146Updated 2 weeks ago
• sdellicour / seraphim
  R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…
  ☆34Updated 2 months ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated last month
• ddarriba / modeltest
  Best-fit model selection
  ☆81Updated last year
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆62Updated 5 months ago
• PathoScope / PathoScope
  Pathoscope: Species identification and strain attribution with unassembled sequencing data
  ☆57Updated 6 years ago
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆242Updated 2 weeks ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆116Updated 3 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆83Updated last year
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated last month
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆55Updated 9 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆108Updated 6 months ago
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆137Updated this week
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated last year