nextstrain / seasonal-fluLinks
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
☆52Updated this week
Alternatives and similar repositories for seasonal-flu
Users that are interested in seasonal-flu are comparing it to the libraries listed below
Sorting:
- Programmatically interact with the GISAID database.☆78Updated last week
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Nextstrain build for mpox virus☆49Updated 2 weeks ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics)☆34Updated 2 weeks ago
- ☆49Updated 3 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆27Updated last month
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Efficient phylogenetic clustering of viral sequences☆88Updated last year
- Nextstrain build for avian influenza viruses☆25Updated 3 weeks ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated last month
- Datasets for https://github.com/nextstrain/nextclade☆37Updated this week
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37Updated 2 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆78Updated this week
- Visualization of the pan-genome output by panX☆63Updated last month
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Creating plasmid maps inside ggplot.☆88Updated 8 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆107Updated last week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆62Updated 11 months ago
- Portable WDL workflows for CZ ID production pipelines☆46Updated last month
- resources for bioinformatics education☆86Updated 2 months ago
- SEER, reimplemented in python 🐍🔮☆123Updated 2 months ago
- viral-ngs: complete pipelines☆65Updated 2 weeks ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 7 years ago
- An R package designed for drawing gene arrow maps☆85Updated 3 weeks ago
- Sydney Phylogenetics Workshop☆64Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- ☆73Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆95Updated last year