nextstrain / seasonal-flu

Related projects ⓘ

Alternatives and complementary repositories for seasonal-flu

• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆71Updated last month
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• jts / ncov-tools
  Small collection of tools for performing quality control on coronavirus sequencing data and genomes
  ☆47Updated 6 months ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆49Updated last year
• CDCgov / phoenix
  🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
  ☆57Updated this week
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆44Updated 4 months ago
• artic-network / primer-schemes
  Primer schemes for real-time genome epidemiology
  ☆27Updated last year
• W-L / ProblematicSites_SARS-CoV2
  ☆48Updated 2 years ago
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆45Updated last week
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆54Updated last year
• ncbi / rapt
  Read Assembly and Annotation Pipeline Tool
  ☆55Updated last month
• cov-lineages / scorpio
  serious constellations of reoccurring phylogenetically-independent origin
  ☆38Updated last year
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 4 years ago
• sdellicour / seraphim
  R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…
  ☆29Updated 2 weeks ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆74Updated 2 weeks ago
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆54Updated 2 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆60Updated last year
• jodyphelan / genomics_course
  ☆11Updated 11 months ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆62Updated last year
• bioinf-mcb / gisaid-scrapper
  Scrapping tool for GISAID data regarding SARS-CoV-2
  ☆41Updated last year
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆62Updated 4 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆52Updated 2 months ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆46Updated last week
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆61Updated 2 months ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆111Updated 3 weeks ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆73Updated last week
• INSaFLU / INSaFLU
  INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…
  ☆33Updated last week
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆68Updated 7 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆109Updated last year
• cov-lineages / pangolin-data
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
  ☆29Updated last month