nextstrain / seasonal-fluLinks
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
☆56Updated this week
Alternatives and similar repositories for seasonal-flu
Users that are interested in seasonal-flu are comparing it to the libraries listed below
Sorting:
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Programmatically interact with the GISAID database.☆80Updated 5 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆115Updated 3 weeks ago
- Nextstrain build for mpox virus☆50Updated last week
- A tool for agile functional analysis of shotgun metagenomic data☆25Updated last year
- resources for bioinformatics education☆100Updated 7 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated last week
- ☆50Updated 3 years ago
- Visualization of the pan-genome output by panX☆65Updated 6 months ago
- SEER, reimplemented in python 🐍🔮☆127Updated 7 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆20Updated 3 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Efficient phylogenetic clustering of viral sequences☆90Updated last month
- Nextstrain build for avian influenza viruses☆27Updated last week
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Sydney Phylogenetics Workshop☆68Updated 6 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆99Updated 3 weeks ago
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- Datasets for https://github.com/nextstrain/nextclade☆42Updated last week
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆57Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Course packets for Bacterial Genetics and Physiology. Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.☆67Updated last week
- viral-ngs: complete pipelines☆70Updated this week
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆89Updated this week
- MEGAN Community Edition☆72Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 8 months ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- Portable WDL workflows for CZ ID production pipelines☆50Updated 6 months ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago