nextflow-io / awesome-nextflow
A curated list of nextflow based pipelines
☆586Updated 2 years ago
Alternatives and similar repositories for awesome-nextflow:
Users that are interested in awesome-nextflow are comparing it to the libraries listed below
- A curated collection of Nextflow implementation patterns☆346Updated last year
- Tools to process and analyze deep sequencing data.☆714Updated last week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆802Updated 9 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆417Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,290Updated this week
- A quality control analysis tool for high throughput sequencing data☆497Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆441Updated last week
- Bioinformatics one liners from Ming Tang☆483Updated 4 years ago
- Java utilities for Bioinformatics☆497Updated 2 weeks ago
- Performant Pythonic GenomicRanges☆468Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆462Updated last month
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆438Updated last year
- Fast genome-wide functional annotation through orthology assignment☆610Updated 11 months ago
- Near-optimal RNA-Seq quantification☆676Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆454Updated last week
- Gene cluster comparison figure generator☆567Updated 5 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,016Updated this week
- A single molecule sequence assembler for genomes large and small.☆674Updated last week
- Structural variation caller using third generation sequencing☆588Updated last week
- Bioinformatics code libraries and scripts☆523Updated 2 months ago
- bedtools - the swiss army knife for genome arithmetic☆978Updated last month
- Cutadapt removes adapter sequences from sequencing reads☆545Updated 3 weeks ago
- Differential analysis of RNA-Seq☆304Updated 9 months ago
- Efficient pythonic random access to fasta subsequences☆468Updated 6 months ago
- A tool to find sequencing data and metadata from public databases.☆572Updated 8 months ago
- ChIP-seq analysis notes from Ming Tang☆790Updated 8 months ago
- A list of interesting genome browser and genome visualization programs☆944Updated this week
- A list of useful bioinformatics resources☆602Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆507Updated 2 months ago