nextflow-io / awesome-nextflowLinks
A curated list of nextflow based pipelines
☆613Updated 5 months ago
Alternatives and similar repositories for awesome-nextflow
Users that are interested in awesome-nextflow are comparing it to the libraries listed below
Sorting:
- A curated collection of Nextflow implementation patterns☆366Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆746Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆505Updated this week
- Near-optimal RNA-Seq quantification☆711Updated 2 weeks ago
- Bioinformatics containers☆763Updated last month
- Java utilities for Bioinformatics☆513Updated last week
- A list of useful bioinformatics resources☆618Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆851Updated last year
- A quality control analysis tool for high throughput sequencing data☆557Updated 2 weeks ago
- Bioinformatics one liners from Ming Tang☆498Updated 5 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,396Updated this week
- Performant Pythonic GenomicRanges☆491Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆520Updated 3 months ago
- Efficient pythonic random access to fasta subsequences☆478Updated 3 months ago
- Python package with helper tools for the nf-core community.☆283Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆706Updated this week
- Bioinformatics code libraries and scripts☆551Updated 4 months ago
- RNA-seq workflow using STAR and DESeq2☆348Updated this week
- Tools for handling Unique Molecular Identifiers in NGS data sets☆531Updated 5 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆763Updated last week
- A list of interesting genome browser and genome visualization programs☆1,032Updated 3 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆512Updated last week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆533Updated 3 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,011Updated 8 months ago
- Haplotype VCF comparison tools☆452Updated 2 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆456Updated last year
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆856Updated 6 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆877Updated 10 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,163Updated this week