nextflow-io / awesome-nextflowLinks
A curated list of nextflow based pipelines
☆590Updated 2 years ago
Alternatives and similar repositories for awesome-nextflow
Users that are interested in awesome-nextflow are comparing it to the libraries listed below
Sorting:
- A curated collection of Nextflow implementation patterns☆359Updated last year
- Bioinformatics one liners from Ming Tang☆484Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,309Updated last week
- Near-optimal RNA-Seq quantification☆686Updated last month
- Java utilities for Bioinformatics☆499Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆813Updated 10 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆446Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated this week
- Tools to process and analyze deep sequencing data.☆720Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 6 months ago
- A quality control analysis tool for high throughput sequencing data☆510Updated last year
- Bioinformatics containers☆723Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆622Updated last year
- A list of useful bioinformatics resources☆603Updated last month
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- A list of interesting genome browser and genome visualization programs☆967Updated last week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆422Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆830Updated this week
- Bioinformatics code libraries and scripts☆525Updated 3 months ago
- Efficient pythonic random access to fasta subsequences☆470Updated this week
- A single molecule sequence assembler for genomes large and small.☆677Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆459Updated 3 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆505Updated 2 months ago
- bedtools - the swiss army knife for genome arithmetic☆979Updated 2 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆510Updated 3 months ago
- Differential analysis of RNA-Seq☆304Updated last week
- Performant Pythonic GenomicRanges☆471Updated 2 months ago
- Gene cluster comparison figure generator☆578Updated 6 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- A tool to find sequencing data and metadata from public databases.☆576Updated 9 months ago