nextflow-io / awesome-nextflow
A curated list of nextflow based pipelines
☆579Updated 2 years ago
Alternatives and similar repositories for awesome-nextflow:
Users that are interested in awesome-nextflow are comparing it to the libraries listed below
- A curated collection of Nextflow implementation patterns☆339Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆794Updated 7 months ago
- Tools to process and analyze deep sequencing data.☆697Updated this week
- Java utilities for Bioinformatics☆492Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,267Updated last week
- Bioinformatics one liners from Ming Tang☆462Updated 4 years ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆424Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated last week
- RNA-seq workflow using STAR and DESeq2☆336Updated 6 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆439Updated 2 months ago
- Differential analysis of RNA-Seq☆305Updated 7 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆407Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆538Updated 7 months ago
- Efficient pythonic random access to fasta subsequences☆464Updated 4 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆803Updated this week
- Haplotype VCF comparison tools☆421Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆457Updated last month
- Fast genome-wide functional annotation through orthology assignment☆588Updated 9 months ago
- A list of useful bioinformatics resources☆595Updated last year
- Gene cluster comparison figure generator☆553Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆669Updated 2 weeks ago
- Near-optimal RNA-Seq quantification☆673Updated 2 months ago
- C++ API & command-line toolkit for working with BAM data☆423Updated 7 months ago
- A tool to find sequencing data and metadata from public databases.☆565Updated 6 months ago
- Python package with helper tools for the nf-core community.☆247Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆799Updated this week
- Incubator for useful bioinformatics code, primarily in Python and R☆614Updated 2 weeks ago
- Bioinformatics code libraries and scripts☆514Updated last week
- Performant Pythonic GenomicRanges☆453Updated 8 months ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆429Updated 2 months ago