SciLifeLab / SarekLinks
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
☆133Updated 5 years ago
Alternatives and similar repositories for Sarek
Users that are interested in Sarek are comparing it to the libraries listed below
Sorting:
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- ☆82Updated 6 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 7 months ago
- The nimble & robust variant annotator☆182Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- VarDict☆198Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Open workflow definitions for genomic analysis from MGI at WUSM.☆105Updated 3 weeks ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆170Updated 5 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆142Updated 6 years ago
- ABRA2☆92Updated 2 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆112Updated 6 years ago
- Tools for processing and analyzing structural variants.☆153Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆98Updated last year
- NEAT read simulation tools☆98Updated 3 years ago
- ☆82Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- Example Nextflow pipelines and programming techniques☆107Updated 2 months ago
- An efficient FASTQ manipulation suite☆137Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆138Updated this week