Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
☆134Jan 27, 2020Updated 6 years ago
Alternatives and similar repositories for Sarek
Users that are interested in Sarek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 7 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Aug 16, 2026Updated 2 weeks ago
- Thousand Variant Callers Project Repository☆74Oct 17, 2019Updated 6 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- See the main fork of this repository here >>>☆39Aug 21, 2026Updated last week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆206Aug 23, 2026Updated last week
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆251Aug 10, 2025Updated last year
- Personal Cancer Genome Reporter (PCGR)☆283Updated this week
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- VCF visualization interface☆180Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 8 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆338May 27, 2025Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 10 months ago
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆30Nov 27, 2025Updated 9 months ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 6 months ago
- ☆11Jul 13, 2018Updated 8 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- structural variant database software☆49Jul 31, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆337May 18, 2026Updated 3 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Aug 20, 2018Updated 8 years ago
- Platypus Variant Caller☆108May 26, 2026Updated 3 months ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Jun 30, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genomic VCF to tab-separated values☆50May 23, 2026Updated 3 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Dec 14, 2022Updated 3 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jul 24, 2026Updated last month
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago