SciLifeLab / SarekLinks
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
☆133Updated 6 years ago
Alternatives and similar repositories for Sarek
Users that are interested in Sarek are comparing it to the libraries listed below
Sorting:
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- ☆81Updated 7 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- VarDict☆201Updated 2 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆143Updated 7 years ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- ABRA2☆95Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 6 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆87Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 4 months ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- The nimble & robust variant annotator☆190Updated last year
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Gene fusion detection and visualization☆131Updated 3 years ago