Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
☆134Jan 27, 2020Updated 6 years ago
Alternatives and similar repositories for Sarek
Users that are interested in Sarek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 7 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cancer Predisposition Sequencing Reporter (CPSR)☆64Updated this week
- Thousand Variant Callers Project Repository☆75Oct 17, 2019Updated 6 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- See the main fork of this repository here >>>☆39Jun 16, 2026Updated 2 weeks ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆206Apr 25, 2026Updated 2 months ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆249Aug 10, 2025Updated 10 months ago
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Personal Cancer Genome Reporter (PCGR)☆279Jun 23, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VCF visualization interface☆178Updated this week
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 8 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 8 months ago
- ☆11Jul 13, 2018Updated 7 years ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 4 months ago
- structural variant database software☆49May 28, 2026Updated last month
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 7 months ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆334May 18, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Aug 20, 2018Updated 7 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆37Jun 30, 2021Updated 5 years ago
- Genomic VCF to tab-separated values☆49May 23, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Platypus Variant Caller☆108May 26, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆407Jun 16, 2026Updated 2 weeks ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago