SciLifeLab / SarekLinks
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
☆133Updated 5 years ago
Alternatives and similar repositories for Sarek
Users that are interested in Sarek are comparing it to the libraries listed below
Sorting:
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 11 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- The nimble & robust variant annotator☆188Updated last year
- ☆82Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 2 months ago
- NEAT read simulation tools☆101Updated 3 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆143Updated 7 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 3 months ago
- ☆83Updated 3 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- ABRA2☆95Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- ☆57Updated 5 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago