Nextflow basic tutorial for newbie users
☆34Jun 17, 2018Updated 8 years ago
Alternatives and similar repositories for nf-hack17-tutorial
Users that are interested in nf-hack17-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 9 years ago
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated 10 months ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- ☆10May 29, 2023Updated 3 years ago
- A curated list of nextflow based pipelines☆635Jun 23, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Command line tool for Wave containers provisioning service☆19Oct 7, 2026Updated 3 weeks ago
- Example Nextflow pipelines and programming techniques☆110May 20, 2026Updated 5 months ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jul 30, 2026Updated 3 months ago
- Mulled - Automatized Containerized Software Repository☆68Mar 18, 2024Updated 2 years ago
- ☆12Sep 26, 2016Updated 10 years ago
- Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper☆11Jun 17, 2025Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Nextflow + Docker tutorial material☆25Oct 24, 2017Updated 9 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Jul 13, 2018Updated 8 years ago
- A curated collection of Nextflow implementation patterns☆374Nov 21, 2023Updated 2 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated last year
- Nextflow plugin for VIM☆50May 27, 2023Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 5, 2026Updated 3 weeks ago
- ☆11Aug 29, 2018Updated 8 years ago
- A talk on Makesfiles in bioinformatics☆26Jul 18, 2013Updated 13 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 9 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- 16S RNA microbiome pipeline☆14Jun 2, 2022Updated 4 years ago
- 🎨 R Consortium Artwork, Logos, and License Guidelines☆11Apr 19, 2022Updated 4 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Dec 14, 2022Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- ☆13Mar 31, 2018Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- On-demand containers provisioning service☆62Updated this week
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- Nextflow language support for Visual Studio Editor☆38Oct 22, 2026Updated last week
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 9 years ago
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago