Nextflow basic tutorial for newbie users
☆33Jun 17, 2018Updated 7 years ago
Alternatives and similar repositories for nf-hack17-tutorial
Users that are interested in nf-hack17-tutorial are comparing it to the libraries listed below
Sorting:
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 8 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated 3 months ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jun 26, 2025Updated 8 months ago
- A curated list of nextflow based pipelines☆621Jun 23, 2025Updated 8 months ago
- ☆11Jul 13, 2018Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- Nextflow plugin for VIM☆50May 27, 2023Updated 2 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- ☆10Aug 29, 2018Updated 7 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Mulled - Automatized Containerized Software Repository☆67Mar 18, 2024Updated 2 years ago
- Command line tool for Wave containers provisioning service☆19Mar 11, 2026Updated last week
- ☆24Jan 25, 2024Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Dec 14, 2022Updated 3 years ago
- Nextflow language support for Visual Studio Editor☆37Feb 27, 2026Updated 3 weeks ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Example Nextflow pipelines and programming techniques☆107Sep 19, 2025Updated 6 months ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 8 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 10 years ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆13Apr 2, 2014Updated 11 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆159Updated this week
- Data and workflow examples☆16Apr 9, 2018Updated 7 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- Nextflow + Docker tutorial material☆25Oct 24, 2017Updated 8 years ago
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Nov 17, 2025Updated 4 months ago
- Workshop material for BioC Asia 2019☆13Dec 22, 2021Updated 4 years ago
- Lecture resources for Python for Bioinformatics EANBiT course.☆20Feb 21, 2019Updated 7 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Telomerecat: The telomere computational analysis tool☆21Aug 4, 2021Updated 4 years ago
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago