nextflow-io / nf-hack17-tutorial
Nextflow basic tutorial for newbie users
☆32Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for nf-hack17-tutorial
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 2 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆25Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- Analysis from kallisto paper☆32Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 2 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆24Updated last month
- An efficient way to guess the library type of your RNA-Seq data.☆29Updated 2 years ago
- ☆18Updated 8 months ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆24Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- See the main fork of this repository here >>>☆38Updated last month
- An automated ChIP-seq pipeline using Nextfow☆17Updated 2 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Mapped QC analysis program☆42Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year