BioContainers / containersLinks
Bioinformatics containers
☆744Updated last week
Alternatives and similar repositories for containers
Users that are interested in containers are comparing it to the libraries listed below
Sorting:
- A curated list of nextflow based pipelines☆605Updated 2 months ago
- Bioinformatics code libraries and scripts☆542Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,349Updated last week
- A list of useful bioinformatics resources☆614Updated 4 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,089Updated last week
- bedtools - the swiss army knife for genome arithmetic☆995Updated 5 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,026Updated last month
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- Tools to process and analyze deep sequencing data.☆734Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,487Updated 2 months ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆696Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆846Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,456Updated this week
- A quality control analysis tool for high throughput sequencing data☆526Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆835Updated last year
- Incubator for useful bioinformatics code, primarily in Python and R☆629Updated 6 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,011Updated last year
- Phylogenetic orthology inference for comparative genomics☆790Updated last month
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆502Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆509Updated 9 months ago
- Near-optimal RNA-Seq quantification☆696Updated 4 months ago
- A fast and sensitive gapped read aligner☆737Updated 8 months ago
- Rapid prokaryotic genome annotation☆930Updated last year
- Java utilities for Bioinformatics☆512Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆999Updated 2 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆645Updated 2 months ago
- SRA Tools☆1,255Updated this week
- A single molecule sequence assembler for genomes large and small.☆690Updated 2 weeks ago
- The next version of bwa-mem☆777Updated 2 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated last month