BioContainers / containersLinks
Bioinformatics containers
☆763Updated last month
Alternatives and similar repositories for containers
Users that are interested in containers are comparing it to the libraries listed below
Sorting:
- A curated list of nextflow based pipelines☆615Updated 6 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,400Updated this week
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- A list of useful bioinformatics resources☆619Updated 8 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆879Updated 10 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,017Updated 9 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,177Updated last week
- A fast and sensitive gapped read aligner☆760Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,519Updated 6 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,023Updated last year
- Tools to process and analyze deep sequencing data.☆750Updated 5 months ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆709Updated this week
- A quality control analysis tool for high throughput sequencing data☆561Updated 2 weeks ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆858Updated 6 months ago
- Near-optimal RNA-Seq quantification☆712Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,490Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆857Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆518Updated 3 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,053Updated 5 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆882Updated last week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆529Updated last week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆857Updated last year
- The second version of the Kraken taxonomic sequence classification system☆856Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,042Updated last week
- Incubator for useful bioinformatics code, primarily in Python and R☆643Updated 10 months ago
- Rapid prokaryotic genome annotation☆946Updated 2 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆515Updated 3 weeks ago
- SPAdes Genome Assembler☆887Updated last week
- Java utilities for Bioinformatics☆513Updated 3 weeks ago
- A single molecule sequence assembler for genomes large and small.☆694Updated last month