nextflow-io / rnaseq-nf
A proof of concept of RNAseq pipeline
☆76Updated 4 months ago
Alternatives and similar repositories for rnaseq-nf:
Users that are interested in rnaseq-nf are comparing it to the libraries listed below
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 4 months ago
- A small-RNA sequencing analysis pipeline☆80Updated 3 weeks ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆74Updated this week
- Tip and tricks for BAM files☆85Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆111Updated last month
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Example Nextflow pipelines and programming techniques☆105Updated 3 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆67Updated this week
- Materials for Spring 2018 Applied Genomics Course☆78Updated 6 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆183Updated this week
- ☆70Updated 3 years ago
- A tool for bigWig files.☆119Updated 6 years ago
- Nextflow training material for introductory tutorial☆104Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Detecting sites of genomic enrichment☆189Updated last year
- Call and score variants from WGS/WES of rare disease patients.☆97Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆125Updated 2 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆96Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Issue tracker for the Biostar Handbook☆62Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆145Updated 9 months ago