nextflow-io / rnaseq-nfLinks
A proof of concept of RNAseq pipeline
☆77Updated 3 weeks ago
Alternatives and similar repositories for rnaseq-nf
Users that are interested in rnaseq-nf are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated last week
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Nextflow training material for introductory tutorial☆105Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated 6 months ago
- Example Nextflow pipelines and programming techniques☆107Updated 3 weeks ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A small-RNA sequencing analysis pipeline☆85Updated this week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated 9 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- ☆69Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆146Updated this week
- Tip and tricks for BAM files☆85Updated 6 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 9 months ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- GWAS Pipeline for H3Africa☆110Updated 2 weeks ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆217Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- ☆120Updated 6 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago