A proof of concept of RNAseq pipeline
☆84May 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for rnaseq-nf
Users that are interested in rnaseq-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated last month
- Classic hello world script in Nextflow language☆26May 13, 2026Updated 3 weeks ago
- A curated collection of Nextflow implementation patterns☆372Nov 21, 2023Updated 2 years ago
- A curated list of nextflow based pipelines☆627Jun 23, 2025Updated 11 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22May 20, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Test data to be used for automated testing with the nf-core pipelines☆163Updated this week
- Tips for Nextflow and cheatsheet for channel operation☆79Aug 14, 2024Updated last year
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 2, 2026Updated last week
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Dec 14, 2022Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,307May 12, 2026Updated 3 weeks ago
- Nextflow Tower system☆155Jan 30, 2025Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- MGKit: Metagenomics Framework☆15Oct 31, 2022Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆66Updated this week
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆416Updated this week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Feb 11, 2026Updated 3 months ago
- Nextflow Tower CLI tool☆54May 22, 2026Updated 2 weeks ago
- Customer workshop materials☆19May 13, 2026Updated 3 weeks ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 3 years ago
- Third-generation fusion gene detection☆13Jul 25, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- minimal example implementations for bioinformatics workflow managers☆290Oct 27, 2021Updated 4 years ago
- Nextflow language support for Visual Studio Editor☆37Updated this week
- A DSL for data-driven computational pipelines☆3,409Updated this week
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Dec 22, 2025Updated 5 months ago
- ☆11Sep 28, 2017Updated 8 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- stageR package☆13May 8, 2026Updated last month
- Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.☆17Jan 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tutorial for DLS-2 migration☆28Sep 16, 2019Updated 6 years ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Apr 9, 2016Updated 10 years ago
- Learning the Variant Call Format☆151Aug 4, 2025Updated 10 months ago
- A software to detect virome-wide integrations☆13Jan 27, 2021Updated 5 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆40May 29, 2026Updated last week
- Config files used to define parameters specific to compute environments at different Institutions☆109Updated this week
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago