nextflow-io / rnaseq-nf
A proof of concept of RNAseq pipeline
☆77Updated last week
Alternatives and similar repositories for rnaseq-nf:
Users that are interested in rnaseq-nf are comparing it to the libraries listed below
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated last week
- A small-RNA sequencing analysis pipeline☆84Updated last week
- Example Nextflow pipelines and programming techniques☆106Updated 5 months ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Nextflow training material for introductory tutorial☆105Updated 2 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 6 months ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 5 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆69Updated this week
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 5 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆144Updated last week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Testing building mulled containers for multi-requirement tools.☆72Updated this week
- Workflows for germline short variant discovery with GATK4☆136Updated 4 years ago
- GWAS Pipeline for H3Africa☆108Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Test data to be used for automated testing with the nf-core pipelines☆122Updated this week
- Match up paired end fastq files quickly and efficiently.☆149Updated 11 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 2 months ago