seqeralabs / nextflow-tutorial
Nextflow training material for introductory tutorial
☆100Updated 2 years ago
Related projects: ⓘ
- A proof of concept of RNAseq pipeline☆68Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆131Updated last year
- RNA-Seq analysis workflow☆103Updated 3 years ago
- GWAS Pipeline for H3Africa☆104Updated this week
- Check strandedness of RNA-Seq fastq files☆112Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆51Updated last year
- Nextflow training material☆122Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆56Updated last week
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆10Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆72Updated this week
- coding exercise using TCGA immune infiltration data☆42Updated 7 months ago
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆106Updated 3 years ago
- ☆47Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆92Updated 6 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆130Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆145Updated this week
- Workflows for converting between sequence data formats☆36Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆130Updated 5 months ago
- Learning the Variant Call Format☆137Updated 5 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆77Updated 2 months ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆83Updated this week
- A structural variation pipeline for short-read sequencing☆169Updated this week
- Pangolin is a deep-learning method for predicting splice site strengths.☆62Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆100Updated 2 months ago
- Example Nextflow pipelines and programming techniques☆97Updated 3 weeks ago
- Quantification of transposable element expression using RNA-seq☆62Updated 7 months ago
- Issue tracker for the Biostar Handbook☆57Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆76Updated last year