Alternatives and similar repositories for nextflow-tutorial

Users that are interested in nextflow-tutorial are comparing it to the libraries listed below

• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆81Updated this week
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆102Updated 3 weeks ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆135Updated 2 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 2 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated this week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 2 months ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated 3 weeks ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆89Updated 2 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆116Updated 8 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆178Updated last month
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 3 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆117Updated 6 months ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆78Updated 2 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆138Updated this week
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆134Updated this week
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆219Updated last month
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆166Updated 3 months ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆111Updated 3 months ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆153Updated last year
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated 3 weeks ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆45Updated 2 years ago
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆151Updated this week
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆130Updated last year
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆78Updated last year
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated 2 years ago