Alternatives and similar repositories for nextflow-tutorial

Users that are interested in nextflow-tutorial are comparing it to the libraries listed below

• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆101Updated 6 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated last month
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆128Updated 3 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆54Updated 2 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆148Updated 6 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 6 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 4 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆123Updated 2 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆138Updated 3 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆89Updated last week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆120Updated last year
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated this week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆74Updated this week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated this week
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆150Updated this week
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆79Updated last year
• schatzlab / appliedgenomics2018
  Materials for Spring 2018 Applied Genomics Course
  ☆79Updated 7 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆158Updated last month
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 3 years ago
• biostars / biostar-handbook
  Issue tracker for the Biostar Handbook
  ☆64Updated 3 years ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated 2 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• NLM-DIR / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆136Updated last week
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆81Updated 2 years ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 6 months ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆93Updated 6 months ago