griffithlab / rnaseq_tutorialLinks
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
☆1,393Updated 2 years ago
Alternatives and similar repositories for rnaseq_tutorial
Users that are interested in rnaseq_tutorial are comparing it to the libraries listed below
Sorting:
- RNAseq analysis notes from Ming Tang☆1,050Updated 3 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,118Updated 2 weeks ago
- ChIP-seq analysis notes from Ming Tang☆830Updated last year
- Analysis of single cell RNA-seq data course☆675Updated 3 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,384Updated this week
- Unix, R and python tools for genomics and data science☆1,326Updated 2 months ago
- A universal enrichment tool for interpreting omics data☆1,135Updated 6 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆875Updated 8 months ago
- A list of useful bioinformatics resources☆616Updated 6 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆758Updated last week
- Supplementary files for my book, "Bioinformatics Data Skills"☆697Updated 7 years ago
- Applied Computational Genomics Course at UU: Spring 2020☆1,057Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,503Updated 4 months ago
- List of software packages for multi-omics analysis☆848Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,204Updated 2 weeks ago
- A repository for setting up a RNAseq workflow☆445Updated 8 years ago
- A comprehensive tutorial about GWAS and PRS☆944Updated 2 years ago
- Bioinformatics code libraries and scripts☆546Updated 3 months ago
- Tools to process and analyze deep sequencing data.☆741Updated 3 months ago
- A list of interesting genome browser and genome visualization programs☆1,017Updated this week
- ☆401Updated 3 years ago
- Near-optimal RNA-Seq quantification☆703Updated 6 months ago
- Bioinformatics one liners from Ming Tang☆495Updated 5 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,525Updated 2 years ago
- ☆629Updated 6 months ago
- ☆442Updated 5 years ago
- SRA Tools☆1,264Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,004Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆845Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆865Updated 2 months ago