griffithlab / rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
☆1,356Updated last year
Alternatives and similar repositories for rnaseq_tutorial:
Users that are interested in rnaseq_tutorial are comparing it to the libraries listed below
- RNAseq analysis notes from Ming Tang☆979Updated 3 years ago
- ChIP-seq analysis notes from Ming Tang☆774Updated 6 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆984Updated last week
- Analysis of single cell RNA-seq data course☆674Updated 2 years ago
- A universal enrichment tool for interpreting omics data☆1,059Updated 2 months ago
- Unix, R and python tools for genomics and data science☆1,234Updated 2 months ago
- ☆384Updated 3 years ago
- List of software packages for multi-omics analysis☆757Updated 9 months ago
- A repository for setting up a RNAseq workflow☆427Updated 7 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆720Updated this week
- Bioinformatics one liners from Ming Tang☆462Updated 4 years ago
- ☆562Updated this week
- A list of scRNA-seq analysis tools☆670Updated 2 months ago
- Supplementary files for my book, "Bioinformatics Data Skills"☆629Updated 6 years ago
- ☆550Updated 3 years ago
- ☆442Updated 4 years ago
- ENCODE ATAC-seq pipeline☆402Updated 7 months ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,446Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆595Updated 3 weeks ago
- Trinity RNA-Seq de novo transcriptome assembly☆849Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆697Updated this week
- Materials for short, half-day workshops☆322Updated this week
- Bioinformatics code libraries and scripts☆514Updated last week
- ☆307Updated 4 months ago
- Applied Computational Genomics Course at UU: Spring 2020☆959Updated 10 months ago
- Differential expression of RNA-seq data using the Negative Binomial☆370Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,267Updated last week
- A list of useful bioinformatics resources☆595Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆502Updated 4 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆487Updated 3 weeks ago