Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
☆1,428May 31, 2023Updated 3 years ago
Alternatives and similar repositories for rnaseq_tutorial
Users that are interested in rnaseq_tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAseq analysis notes from Ming Tang☆1,093Nov 15, 2021Updated 4 years ago
- A repository for setting up a RNAseq workflow☆458Apr 10, 2017Updated 9 years ago
- ☆447Jun 15, 2020Updated 6 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,808Updated this week
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis of single cell RNA-seq data course☆682Apr 11, 2022Updated 4 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,339Updated this week
- Unix, R and python tools for genomics and data science☆1,402Aug 25, 2025Updated 10 months ago
- RNA-seq aligner☆2,224Mar 18, 2025Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆895Apr 23, 2026Updated 2 months ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,578Dec 11, 2022Updated 3 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Aug 30, 2021Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,479Jun 29, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Differential analysis of RNA-Seq☆316May 28, 2025Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,400Jul 10, 2026Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- Genome data visualizations☆226Jan 10, 2026Updated 6 months ago
- scRNAseq analysis notes from Ming Tang☆821Dec 2, 2024Updated last year
- A curated list of nextflow based pipelines☆629Jun 23, 2025Updated last year
- Applied Computational Genomics Course at UU: Spring 2020☆1,095Apr 5, 2024Updated 2 years ago
- A curated list of awesome Bioinformatics libraries and software.☆4,177Apr 7, 2026Updated 3 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,547Jun 1, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Near-optimal RNA-Seq quantification☆767Jul 12, 2026Updated last week
- Tools to process and analyze deep sequencing data.☆762Updated this week
- Bioinformatics one liners from Ming Tang☆501Oct 4, 2020Updated 5 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆918Updated this week
- A list of useful bioinformatics resources☆636May 4, 2026Updated 2 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,041Jun 10, 2026Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆895Jul 10, 2024Updated 2 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26May 7, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SRA Tools☆1,354Updated this week
- A flexible framework for rapid genome analysis and interpretation☆320Oct 18, 2022Updated 3 years ago
- Java utilities for Bioinformatics☆525Updated this week
- DNA sequencing analysis notes from Ming Tang☆149Mar 26, 2023Updated 3 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆372Jul 6, 2026Updated 2 weeks ago
- website for the rnaseq course☆125Jun 24, 2026Updated 3 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,097Jul 5, 2026Updated 2 weeks ago