Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
☆1,418May 31, 2023Updated 2 years ago
Alternatives and similar repositories for rnaseq_tutorial
Users that are interested in rnaseq_tutorial are comparing it to the libraries listed below
Sorting:
- RNAseq analysis notes from Ming Tang☆1,072Nov 15, 2021Updated 4 years ago
- A repository for setting up a RNAseq workflow☆455Apr 10, 2017Updated 8 years ago
- ☆445Jun 15, 2020Updated 5 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,678Mar 9, 2026Updated last week
- ChIP-seq analysis notes from Ming Tang☆845Aug 5, 2024Updated last year
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,027Aug 24, 2024Updated last year
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,229Updated this week
- Unix, R and python tools for genomics and data science☆1,374Aug 25, 2025Updated 6 months ago
- RNA-seq aligner☆2,158Mar 18, 2025Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆885Feb 7, 2025Updated last year
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,556Dec 11, 2022Updated 3 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Aug 30, 2021Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,429Mar 12, 2026Updated last week
- Differential analysis of RNA-Seq☆312May 28, 2025Updated 9 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,303Updated this week
- Useful bash one-liners for bioinformatics.☆1,999Sep 9, 2023Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- Genome data visualizations☆221Jan 10, 2026Updated 2 months ago
- scRNAseq analysis notes from Ming Tang☆786Dec 2, 2024Updated last year
- A curated list of nextflow based pipelines☆621Jun 23, 2025Updated 8 months ago
- Applied Computational Genomics Course at UU: Spring 2020☆1,077Apr 5, 2024Updated last year
- A curated list of awesome Bioinformatics libraries and software.☆3,902Feb 28, 2026Updated 2 weeks ago
- Toolkit for processing sequences in FASTA/Q formats☆1,531Jun 1, 2025Updated 9 months ago
- Near-optimal RNA-Seq quantification☆750Mar 10, 2026Updated last week
- Bioinformatics one liners from Ming Tang☆500Oct 4, 2020Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 7 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆870Mar 11, 2026Updated last week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆831Feb 10, 2026Updated last month
- A list of useful bioinformatics resources☆627Apr 29, 2025Updated 10 months ago
- website for the rnaseq course☆118Feb 20, 2026Updated last month
- bedtools - the swiss army knife for genome arithmetic☆1,027Mar 11, 2025Updated last year
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26May 7, 2020Updated 5 years ago
- SRA Tools☆1,314Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Java utilities for Bioinformatics☆518Updated this week
- DNA sequencing analysis notes from Ming Tang☆148Mar 26, 2023Updated 2 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆362Jun 6, 2025Updated 9 months ago