griffithlab / rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
☆1,361Updated last year
Alternatives and similar repositories for rnaseq_tutorial:
Users that are interested in rnaseq_tutorial are comparing it to the libraries listed below
- RNAseq analysis notes from Ming Tang☆991Updated 3 years ago
- ChIP-seq analysis notes from Ming Tang☆781Updated 7 months ago
- Analysis of single cell RNA-seq data course☆672Updated 2 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,005Updated this week
- Unix, R and python tools for genomics and data science☆1,257Updated 2 weeks ago
- Bioinformatics one liners from Ming Tang☆483Updated 4 years ago
- A repository for setting up a RNAseq workflow☆428Updated 7 years ago
- Supplementary files for my book, "Bioinformatics Data Skills"☆648Updated 6 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,035Updated 4 months ago
- A universal enrichment tool for interpreting omics data☆1,077Updated last month
- Applied Computational Genomics Course at UU: Spring 2020☆964Updated 11 months ago
- List of software packages for multi-omics analysis☆768Updated 11 months ago
- ☆388Updated 3 years ago
- Bioinformatics code libraries and scripts☆520Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆725Updated last month
- A curated list of resources for learning bioinformatics.☆473Updated 3 years ago
- ☆555Updated 4 years ago
- ☆441Updated 4 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆381Updated 3 weeks ago
- A list of useful bioinformatics resources☆600Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆852Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,282Updated this week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,463Updated 2 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,442Updated 7 months ago
- A list of interesting genome browser and genome visualization programs☆928Updated this week
- Tools to process and analyze deep sequencing data.☆707Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆797Updated 8 months ago
- ☆312Updated 6 months ago
- Near-optimal RNA-Seq quantification☆673Updated 3 months ago
- ☆574Updated last week