IARCbioinfo / IARC-nf
List of IARC bioinformatics nextflow pipelines
☆47Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for IARC-nf
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated 2 weeks ago
- QDNAseq package for Bioconductor☆48Updated 3 months ago
- ☆78Updated 10 years ago
- Tip and tricks for BAM files☆82Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- Powerful statistics for VCF files☆64Updated last year
- ☆23Updated 2 months ago
- BAM Statistics, Feature Counting and Annotation☆145Updated last week
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Galaxy RNA workbench☆38Updated 4 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆66Updated this week
- R package for inferring copy number from read depth☆31Updated 2 years ago