IARCbioinfo / IARC-nfLinks
List of IARC bioinformatics nextflow pipelines
☆51Updated 6 months ago
Alternatives and similar repositories for IARC-nf
Users that are interested in IARC-nf are comparing it to the libraries listed below
Sorting:
- BigWig and BAM utilities☆96Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 8 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Precision HLA typing from next-generation sequencing data☆69Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆27Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Reference genome resource manager☆76Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Powerful statistics for VCF files☆70Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆100Updated 2 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- ☆63Updated 4 years ago
- ☆78Updated 11 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- ☆50Updated 4 years ago