montilab / pipelinerLinks
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
☆44Updated 6 years ago
Alternatives and similar repositories for pipeliner
Users that are interested in pipeliner are comparing it to the libraries listed below
Sorting:
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 6 months ago
- See the main fork of this repository here >>>☆38Updated 7 months ago
- ☆35Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- Transcript quantification import with automatic metadata detection☆67Updated last week
- List of IARC bioinformatics pipelines and resources☆55Updated last month
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- ☆33Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last month
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 6 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆54Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated 2 weeks ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated 5 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago