montilab / pipeliner
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
☆44Updated 5 years ago
Alternatives and similar repositories for pipeliner
Users that are interested in pipeliner are comparing it to the libraries listed below
Sorting:
- A GitHub action to install Nextflow☆18Updated this week
- An automated RNA-seq pipeline using Nextflow☆37Updated 7 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆51Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- See the main fork of this repository here >>>☆38Updated last week
- Nextflow basic tutorial for newbie users☆33Updated 6 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated 2 weeks ago
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Deep Variant as a Nextflow pipeline☆30Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 9 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆37Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- SeqMonk NGS visualisation and analysis tool☆49Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 10 months ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- R package for genomic feature analysis and visualization☆78Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆67Updated last month
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago