A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
☆44May 19, 2026Updated last week
Alternatives and similar repositories for pipeliner
Users that are interested in pipeliner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- A curated list of nextflow based pipelines☆626Jun 23, 2025Updated 11 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- ☆10Aug 29, 2018Updated 7 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated last month
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17May 18, 2026Updated last week
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Aug 20, 2025Updated 9 months ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆249Aug 10, 2025Updated 9 months ago
- Kraken2 Server☆23Nov 24, 2025Updated 6 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- Maximum Likelihood Amplicon Pipeline☆22May 22, 2024Updated 2 years ago
- ☆14Aug 31, 2016Updated 9 years ago
- Genotype Imputation Pipeline for H3Africa☆25Nov 5, 2024Updated last year
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes