lifebit-ai / DeepVariantLinks
Deep Variant as a Nextflow pipeline
☆30Updated 5 years ago
Alternatives and similar repositories for DeepVariant
Users that are interested in DeepVariant are comparing it to the libraries listed below
Sorting:
- See the main fork of this repository here >>>☆39Updated 2 weeks ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 9 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆54Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Gene Fusion Visualiser☆51Updated 3 years ago
- FusionInspector code☆58Updated 4 months ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated 3 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 6 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- ☆69Updated 3 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 2 months ago
- Multi-sample somatic variant caller☆52Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆44Updated 5 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 4 months ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last month
- ☆35Updated 5 years ago