lifebit-ai / DeepVariant
Deep Variant as a Nextflow pipeline
☆30Updated 4 years ago
Alternatives and similar repositories for DeepVariant:
Users that are interested in DeepVariant are comparing it to the libraries listed below
- See the main fork of this repository here >>>☆38Updated 3 weeks ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆51Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- GATK4 Best Practice Nextflow Pipeline☆31Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆65Updated last week
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆43Updated 5 years ago
- FusionInspector code☆57Updated 4 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- RNAseq analysis pipeline☆24Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 5 months ago