CRG-CNAG / CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
☆132Updated 2 years ago
Alternatives and similar repositories for CalliNGS-NF:
Users that are interested in CalliNGS-NF are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆143Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆208Updated 6 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- ☆116Updated 2 months ago
- Documentation and description of AWS iGenomes S3 resource.☆109Updated last month
- A (mostly) universal methylation extractor for BS-seq experiments.☆168Updated 6 months ago
- ABRA2☆92Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated 2 months ago
- Script to automatically create and run IGV snapshot batchscripts☆139Updated 2 years ago
- ASCAT R package☆173Updated last month
- Relevant papers for CNV and SV approaches☆94Updated 2 months ago
- ☆82Updated 6 years ago
- Match up paired end fastq files quickly and efficiently.☆144Updated 7 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆98Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆200Updated this week
- Annotation and Ranking of Structural Variation☆228Updated this week
- VarDict☆191Updated last year
- Learning the Variant Call Format☆138Updated 9 months ago
- A small-RNA sequencing analysis pipeline☆77Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- A structural variation pipeline for short-read sequencing☆175Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆84Updated 4 months ago
- Check strandedness of RNA-Seq fastq files☆118Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆137Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆154Updated 3 weeks ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago