Rapid analysis and visualization of coronavirus genome variation
☆48Feb 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for covizu
Users that are interested in covizu are comparing it to the libraries listed below
Sorting:
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 2 months ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- ☆43Feb 13, 2026Updated last month
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 6 months ago
- A tool for exploring large trees in the browser☆125Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 3 weeks ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 3 years ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 4 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 7 months ago
- Pyro models of SARS-CoV-2 variants☆77Jul 26, 2024Updated last year
- The ARTIC fieldbioinformatics pipeline☆130Feb 24, 2026Updated 3 weeks ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated 9 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆117Mar 12, 2026Updated last week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆19Updated this week
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- ☆16Oct 29, 2025Updated 4 months ago
- An RNA virus strain-level identification tool for short reads.☆23Updated this week
- Influenza genome analysis Nextflow workflow☆24Mar 10, 2026Updated last week
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Jul 13, 2018Updated 7 years ago
- Reference-based consensus creation☆59Mar 13, 2026Updated last week
- ☆16Oct 2, 2019Updated 6 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆134Mar 13, 2026Updated last week
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆451Updated this week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- online notebooks for a review of genome sketching☆60Sep 23, 2019Updated 6 years ago
- ggplot2-style plots with base R graphics☆70Sep 30, 2025Updated 5 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated last month
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 3 months ago