Annotates variants in MAF with OncoKB annotation.
☆144May 13, 2026Updated last week
Alternatives and similar repositories for oncokb-annotator
Users that are interested in oncokb-annotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- ☆36May 15, 2026Updated last week
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 6 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Updated this week
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆417Mar 13, 2026Updated 2 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated last year
- An R package to time somatic mutations☆70Dec 12, 2020Updated 5 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆515May 15, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16May 8, 2023Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- ASCAT R package☆200Feb 12, 2026Updated 3 months ago
- ☆37Mar 16, 2021Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Copy number variant detection from targeted DNA sequencing☆610Updated this week
- Personal Cancer Genome Reporter (PCGR)☆277May 15, 2026Updated last week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated last year
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated last month
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- STAR-Fusion codebase☆254Apr 18, 2026Updated last month
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆123Aug 19, 2020Updated 5 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 7 months ago
- scripts to automatically update ANNOVAR db☆19Nov 17, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆69Jun 21, 2022Updated 3 years ago
- FusionInspector code☆61Apr 23, 2026Updated last month
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆95May 11, 2026Updated 2 weeks ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Mar 31, 2026Updated last month