oncokb / oncokb-annotatorLinks
Annotates variants in MAF with OncoKB annotation.
☆132Updated 3 weeks ago
Alternatives and similar repositories for oncokb-annotator
Users that are interested in oncokb-annotator are comparing it to the libraries listed below
Sorting:
- ☆116Updated last year
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆131Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆185Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated last year
- ☆117Updated last year
- deconstructSigs☆142Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆138Updated 10 months ago
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- ☆41Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆112Updated last year
- ☆74Updated 2 months ago
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆109Updated 3 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- ASCAT R package☆184Updated 3 months ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆104Updated 4 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆68Updated 2 years ago