Annotates variants in MAF with OncoKB annotation.
☆141Feb 19, 2026Updated last month
Alternatives and similar repositories for oncokb-annotator
Users that are interested in oncokb-annotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- ☆35Mar 18, 2026Updated last week
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23Updated this week
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆415Mar 13, 2026Updated last week
- ☆43Feb 9, 2024Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated 10 months ago
- An R package to time somatic mutations☆67Dec 12, 2020Updated 5 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆508Feb 26, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆16May 8, 2023Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- Characterization of Germline variants☆100Mar 15, 2022Updated 4 years ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- ☆36Mar 16, 2021Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Copy number variant detection from targeted DNA sequencing☆606Mar 11, 2026Updated 2 weeks ago
- Personal Cancer Genome Reporter (PCGR)☆274Mar 17, 2026Updated last week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 6 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- Python package to annotate and visualize gene fusions.☆66Sep 30, 2024Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- STAR-Fusion codebase☆249Oct 4, 2025Updated 5 months ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆119Aug 19, 2020Updated 5 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 5 months ago
- scripts to automatically update ANNOVAR db☆18Nov 17, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆69Jun 21, 2022Updated 3 years ago
- FusionInspector code☆59Updated this week
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated last month