A standalone end-to-end data analysis pipeline for Duplex Sequencing
☆21Oct 25, 2023Updated 2 years ago
Alternatives and similar repositories for Duplex-Seq-Pipeline
Users that are interested in Duplex-Seq-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆57Mar 31, 2020Updated 5 years ago
- Fragmentase Artifact Detection and Elimination☆12Mar 22, 2022Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- ☆36Mar 16, 2021Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- Tools for working with genomic and high throughput sequencing data.☆360Updated this week
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99May 21, 2024Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆11Oct 19, 2021Updated 4 years ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- testing where SNP are in the humain genom☆12Oct 24, 2016Updated 9 years ago
- Genome browser hub for the T2T genomes and resources☆27Mar 11, 2026Updated 2 weeks ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆115Sep 2, 2024Updated last year
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- ☆31Mar 5, 2024Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 3 years ago
- Search for a set of compatible indexes for your sequencing experiment☆11Sep 6, 2019Updated 6 years ago
- TransVar - multiway annotator for precision medicine☆127Apr 19, 2023Updated 2 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- pipeline for dog WGS alignment☆15Jun 27, 2023Updated 2 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆119Feb 8, 2026Updated last month
- ☆26Dec 4, 2019Updated 6 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- HGVS variant nomenclature checker☆98May 1, 2023Updated 2 years ago
- Pipeline for GTseq genotyping and quality control☆15Jan 30, 2023Updated 3 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge☆15Dec 10, 2015Updated 10 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆149Sep 9, 2025Updated 6 months ago