higlass / higlass-pileup
☆10Updated last month
Alternatives and similar repositories for higlass-pileup:
Users that are interested in higlass-pileup are comparing it to the libraries listed below
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 5 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Updated 2 months ago
- Fast sequencing data quality metrics☆26Updated last month
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- ☆16Updated 3 months ago
- convert CHAIN format to PAF format☆14Updated 4 months ago
- The python binding for D4 format☆16Updated 3 years ago
- Genome browser hub for the T2T genomes and resources☆21Updated last month
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 5 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Short Tandem Repeat disease loci resource☆18Updated this week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 5 months ago
- k-mer similarity analysis pipeline☆21Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last week
- ☆13Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- Run multiple programs to check if a VCF is usable☆11Updated 4 years ago