higlass / higlass-pileup
☆10Updated 2 weeks ago
Alternatives and similar repositories for higlass-pileup:
Users that are interested in higlass-pileup are comparing it to the libraries listed below
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last week
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- ☆9Updated 2 years ago
- ☆14Updated 7 months ago
- convert CHAIN format to PAF format☆14Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 4 months ago
- Fast sequencing data quality metrics☆23Updated last week
- ☆16Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- k-mer similarity analysis pipeline☆20Updated 3 weeks ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Location of public benchmarking; primarily final results☆18Updated this week
- Short Tandem Repeat disease loci resource☆14Updated this week
- Genome browser hub for the T2T genomes and resources☆17Updated this week
- Teaching modules for Human Genome Variation Lab.☆19Updated 6 months ago
- Variant call adjudication☆16Updated 8 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- ☆41Updated 3 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 10 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year