higlass / higlass-pileup
☆10Updated this week
Alternatives and similar repositories for higlass-pileup:
Users that are interested in higlass-pileup are comparing it to the libraries listed below
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- k-mer similarity analysis pipeline☆20Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- BED QC tool (in the making)☆16Updated 2 years ago
- convert CHAIN format to PAF format☆14Updated 3 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Fast sequencing data quality metrics☆25Updated this week
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- The python binding for D4 format☆16Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated this week
- ☆16Updated 2 months ago
- ☆15Updated 3 weeks ago
- ☆21Updated 2 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Quality of life improvements for Bioinformatics in Python.☆27Updated this week
- Align subreads to ccs reads☆13Updated last year
- ☆9Updated 2 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- ☆14Updated last year