higlass / higlass-pileup
☆10Updated this week
Related projects ⓘ
Alternatives and complementary repositories for higlass-pileup
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- convert CHAIN format to PAF format☆13Updated 6 months ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- an interactive web viewer for reference pangenome graphs☆24Updated last week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆15Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Fast sequencing data quality metrics☆17Updated this week
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- ☆13Updated last year
- Generate random test data for bioinformatics☆25Updated 5 months ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- BED QC tool (in the making)☆15Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- Functions to compare a SV call sets against a truth set.☆26Updated 6 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated 11 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- ☆9Updated 2 years ago