leiwei-bioinfo / MACLinks
Multi-nucleotide Variation Annotation Corrector
☆11Updated 2 years ago
Alternatives and similar repositories for MAC
Users that are interested in MAC are comparing it to the libraries listed below
Sorting:
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆25Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆36Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated last week
- Python package to annotate and visualize gene fusions.☆64Updated 11 months ago
- BIC@MSKCC Variants Pipeline☆24Updated 2 years ago
- ☆46Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- ☆53Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- ☆69Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year