zwdzwd / transvar
TransVar - multiway annotator for precision medicine
☆122Updated last year
Alternatives and similar repositories for transvar:
Users that are interested in transvar are comparing it to the libraries listed below
- VarDict☆192Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆237Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆195Updated 11 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Software program for checking sample matching for NGS data☆128Updated 8 months ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆179Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Annotates variants in MAF with OncoKB annotation.☆126Updated 4 months ago
- Gene fusion detection and visualization☆120Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- VarDict Java port☆131Updated last year
- A tool set for short variant discovery in genetic sequence data.☆195Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- ABRA2☆92Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 5 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆82Updated 2 weeks ago
- ☆110Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆128Updated 4 years ago
- a lightweight bam file depth statistical tool☆149Updated 5 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- deconstructSigs☆140Updated last year
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆116Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 8 months ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- ☆174Updated last year
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago