zwdzwd / transvarLinks
TransVar - multiway annotator for precision medicine
☆125Updated 2 years ago
Alternatives and similar repositories for transvar
Users that are interested in transvar are comparing it to the libraries listed below
Sorting:
- VarDict☆200Updated last year
- A structural variation pipeline for short-read sequencing☆188Updated last week
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated last month
- ABRA2☆92Updated 2 years ago
- Annotates variants in MAF with OncoKB annotation.☆130Updated 3 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- Annotation and Ranking of Structural Variation☆258Updated 3 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆241Updated 7 months ago
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago
- Gene fusion detection and visualization☆126Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- VarDict Java port☆134Updated last year
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆151Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- a lightweight bam file depth statistical tool☆150Updated 8 months ago
- phasing and Allele Specific Expression from RNA-seq☆115Updated 10 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆222Updated 3 years ago
- Software program for checking sample matching for NGS data☆132Updated 11 months ago