ltnetcase / BedAnno
Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
☆19Updated last year
Alternatives and similar repositories for BedAnno:
Users that are interested in BedAnno are comparing it to the libraries listed below
- Data and information about the Polaris study☆53Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ☆39Updated 9 months ago
- ☆38Updated 11 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 4 months ago
- Concordance and contamination estimator for tumor–normal pairs☆56Updated 3 months ago
- CNV screening and annotation tool☆24Updated 8 years ago
- ☆51Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Assembly Based ReAligner☆72Updated 6 years ago
- Structural Variant Index☆71Updated last month
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- ☆36Updated 3 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 4 years ago
- ☆35Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆103Updated 4 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated 3 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆78Updated 2 years ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- CN-Learn☆29Updated 5 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 8 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- ☆78Updated 10 years ago
- Thousand Variant Callers Project Repository☆71Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago