Alternatives and similar repositories for CellFie

Users that are interested in CellFie are comparing it to the libraries listed below

• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 4 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 10 months ago
• erhard-lab / grandR
  R package for nucleotide conversion sequencing data analysis
  ☆16Updated 10 months ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 3 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 3 months ago
• erhard-lab / price
  Improved Ribo-seq enables identification of cryptic translation events
  ☆16Updated 7 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 11 months ago
• MarieOestreich / hCoCena
  ☆15Updated 10 months ago
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆14Updated last month
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆16Updated 3 years ago
• ConesaLab / TCR_nextflow
  ☆12Updated 3 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆13Updated last year
• landau-lab / Gotcha
  Pipeline for processing of GoT-ChA genotyping data and downstream analysis
  ☆15Updated 9 months ago
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated 2 years ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 2 months ago
• BorchLab / immApex
  Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning
  ☆12Updated last week
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• CellProfiling / SingleCellProteogenomics
  Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
  ☆13Updated 2 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated 2 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 5 months ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 6 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• matsengrp / phippery
  ☆18Updated last year
• ziyili20 / TOAST
  Tools for the analysis of heterogeneous tissues
  ☆12Updated 3 years ago
• mlbendall / telescope_annotation_db
  Transposable element databases
  ☆13Updated 3 years ago