Alternatives and similar repositories for CellFie

Users that are interested in CellFie are comparing it to the libraries listed below

• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 4 months ago
• erhard-lab / grandR
  R package for nucleotide conversion sequencing data analysis
  ☆13Updated 3 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆35Updated this week
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• matsengrp / phippery
  ☆18Updated 7 months ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 4 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆14Updated 3 weeks ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 3 years ago
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 3 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last week
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated last year
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 4 years ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆24Updated this week
• GuoBioinfoLab / CATT
  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
  ☆21Updated last year
• ThieleLab / CodeBase
  Code depository for papers
  ☆24Updated 5 months ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆28Updated 2 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated last month
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆27Updated 7 years ago
• danielriosgarza / MAMBO
  ☆11Updated 5 years ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 4 years ago
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated last month
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆32Updated 3 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated last month
• kkrismer / transite
  RNA-binding protein motif analysis
  ☆11Updated 10 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆48Updated 3 weeks ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 2 months ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆27Updated last year
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated 3 months ago
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆36Updated 2 months ago