holab-hku / DCATSLinks
☆10Updated 2 years ago
Alternatives and similar repositories for DCATS
Users that are interested in DCATS are comparing it to the libraries listed below
Sorting:
- R implementation of MULTI-seq sample classification workflow☆63Updated last year
- Draw phylogenetic trees of tumor evolution☆81Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆111Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- ☆33Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆66Updated 3 years ago
- ☆17Updated last year
- ☆113Updated 4 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Functional Inference of Gene Regulation☆45Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Repository for Cibersortx☆61Updated 4 years ago
- SNV calling from single cell sequencing☆104Updated 8 months ago
- Create cisTarget databases☆52Updated last month
- ☆68Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆69Updated last week
- ☆31Updated last year
- scWGCNA☆61Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆75Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago