cwieder / py-ssPALinks
Single sample pathway analysis tools for omics data
☆12Updated 6 months ago
Alternatives and similar repositories for py-ssPA
Users that are interested in py-ssPA are comparing it to the libraries listed below
Sorting:
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 6 months ago
- Gene Ontology Gene Sets from BioMart☆11Updated last year
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- ☆27Updated 2 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- MeSH Enrichment and Semantic analyses☆12Updated last month
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Multi-omics data normalisation, model fitting and visualisation.☆25Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated last month
- an R package for deep mining gene co-expression networks in multi-trait expression data☆19Updated last week
- 5-day workshop on Metabolomics and Data Analysis☆16Updated 5 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆13Updated 2 weeks ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last month
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- ☆32Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 4 months ago
- ☆30Updated 4 years ago
- MetNormalizer is used to normalize large scale metabolomics data.☆22Updated 4 years ago
- FunctionaL Omics Processing platform☆13Updated 10 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Exploration of Omics data☆25Updated 4 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 4 months ago
- Course Materials for Genomics Data Mining☆22Updated this week
- metaX: a flexible and comprehensive software for processing omics data.☆26Updated last year
- Omics data analysis☆15Updated 2 months ago