cwieder / py-ssPALinks
Single sample pathway analysis tools for omics data
☆13Updated 11 months ago
Alternatives and similar repositories for py-ssPA
Users that are interested in py-ssPA are comparing it to the libraries listed below
Sorting:
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 11 months ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆16Updated this week
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 4 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 5 months ago
- metaX: a flexible and comprehensive software for processing omics data.☆25Updated 2 years ago
- R interface to Chemical Translation Service (CTS)☆17Updated last year
- ☆28Updated 2 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- A set of processes/pipelines for bioinformatics☆13Updated last week
- Junction centric alternative splicing translator☆20Updated 2 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 4 months ago
- Integrated Machine Learning for Multi-omics Classification and Prediction☆25Updated 3 weeks ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated last year
- ☆14Updated last week
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Updated last month
- Open-Source Software for Omic Data Analysis and Visualization☆38Updated this week
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Updated 5 years ago
- Supporting material for "Processing and visualization of metabolomics data using R"☆20Updated 8 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- ☆10Updated 5 years ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 5 months ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆19Updated 7 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Updated 5 months ago
- FunctionaL Omics Processing platform☆13Updated last year
- Exploration of Omics data☆25Updated 4 years ago
- pathway based data integration and visualization☆41Updated 6 months ago