cwieder / py-ssPALinks
Single sample pathway analysis tools for omics data
☆13Updated last year
Alternatives and similar repositories for py-ssPA
Users that are interested in py-ssPA are comparing it to the libraries listed below
Sorting:
- PathIntegrate Python package for pathway-based multi-omics data integration☆17Updated last year
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆16Updated this week
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- R for Mass Spectrometry documentation☆12Updated this week
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 4 years ago
- Supporting material for "Processing and visualization of metabolomics data using R"☆20Updated 8 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- Junction centric alternative splicing translator☆20Updated 3 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 7 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- A set of processes/pipelines for bioinformatics☆13Updated this week
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 3 weeks ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 7 months ago
- metaX: a flexible and comprehensive software for processing omics data.☆25Updated 2 years ago
- ☆28Updated 2 years ago
- pathway based data integration and visualization☆42Updated 7 months ago
- ☆14Updated this week
- MuDCoD: Multi-subject Dynamic Community Detection☆12Updated 8 months ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Updated 5 years ago
- ☆10Updated 6 years ago
- R interface to Chemical Translation Service (CTS)☆17Updated last year
- Workflow4Metabolomics meta repository☆11Updated 5 months ago
- FunctionaL Omics Processing platform☆13Updated last year
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Updated 2 weeks ago
- Exploration of Omics data☆25Updated 4 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 5 months ago
- ☆33Updated 5 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆40Updated this week
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆12Updated 3 weeks ago
- R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 4 years ago