Publication Page for ArchR Manuscript 2020
☆24Aug 17, 2021Updated 5 years ago
Alternatives and similar repositories for ArchR_2020
Users that are interested in ArchR_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year
- ☆14Dec 15, 2019Updated 6 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- ☆18Mar 31, 2024Updated 2 years ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆42Mar 31, 2026Updated 6 months ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- ☆13Mar 5, 2024Updated 2 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆15Feb 7, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- Estimate PTM hotspots in protein sequence alignments☆16Feb 6, 2019Updated 7 years ago
- ☆20May 20, 2021Updated 5 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆58Jan 6, 2025Updated last year
- TCGA Splicing Variation Database Cancer Splicing Variant Database Cancer alternative splicing database☆14Jun 9, 2025Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- ☆13Dec 7, 2020Updated 5 years ago
- ☆30Jan 30, 2026Updated 8 months ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 4 years ago
- ☆10May 31, 2022Updated 4 years ago
- API for HOMER in R for Genomic Analysis using Tidy Conventions☆19Dec 1, 2021Updated 4 years ago
- ☆92Apr 5, 2021Updated 5 years ago
- Viscello for Visualization of Single Cell Data☆27Oct 5, 2024Updated 2 years ago
- ☆16Mar 15, 2023Updated 3 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆41Jan 14, 2024Updated 2 years ago
- ☆14Jul 18, 2025Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 10 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆19Oct 12, 2021Updated 4 years ago
- ☆22Aug 4, 2024Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆42Jan 30, 2024Updated 2 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆25Feb 24, 2025Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆68Sep 12, 2023Updated 3 years ago