AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Allen brain atlas
☆14Apr 2, 2023Updated 3 years ago
Alternatives and similar repositories for Allendigger
Users that are interested in Allendigger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial analysis of FISH data☆33Jun 5, 2026Updated last week
- Attacking indiscriminately every header, cookie, GET and POST parameter with blind fury.☆13Sep 25, 2025Updated 8 months ago
- This project implenments the OSPF using Dijkstra algorithm (Open Shortest Path First) network protocol in python. Link-State Routing pr…☆12Sep 1, 2017Updated 8 years ago
- ☆11May 6, 2024Updated 2 years ago
- ☆11Dec 3, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 8 years ago
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 5 months ago
- Open Scripts and pipelines from the Cognitiveneurogenetics Lab at the Max Planck Institute for Human Cognitive and Brain Sciences and For…☆13Jan 15, 2025Updated last year
- Toolbox for the processing and analysis of MALDI-MSI data☆15Sep 10, 2025Updated 9 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Non-Maximum Suppression for Object Detection in Python☆15May 10, 2018Updated 8 years ago
- https://doi.org/10.1101/2021.02.22.432228☆11Nov 24, 2021Updated 4 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Nov 13, 2024Updated last year
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆16Jul 1, 2024Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Aug 22, 2017Updated 8 years ago
- ☆14Aug 7, 2023Updated 2 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- ☆22Jan 6, 2026Updated 5 months ago
- NaturePanelForge is a code-first workflow for turning scientific figure images and open-access Nature-family papers into panel-level, exe…☆156Jun 5, 2026Updated 2 weeks ago
- Generate amazing umap network graphs☆11Mar 16, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Jul 7, 2021Updated 4 years ago
- A General Model for Learning and Decision-Making in Artificial Animals☆10Jun 18, 2017Updated 9 years ago
- A simple implementation of UMAP, TSNE and GDR across frameworks and libraries☆13Dec 10, 2024Updated last year
- R for Data Science (2e) in Simplified Chinese☆25Mar 15, 2026Updated 3 months ago
- ☆47Jun 27, 2023Updated 2 years ago
- collection of mass spectrometry imaging workflows☆22Mar 17, 2026Updated 3 months ago
- Gaussian blur in Fortran and Python. Handles masked input data.☆10Mar 16, 2015Updated 11 years ago
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- Calculate the fractal dimensionality of a 3D structure☆20Apr 29, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Calcium imaging inter-session alignment☆17Jun 8, 2026Updated last week
- ☆13Mar 27, 2026Updated 2 months ago
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆22Oct 28, 2025Updated 7 months ago
- Matplotlib and scipy to fit Gaussian/Lorentzian curves to raw data☆11May 24, 2024Updated 2 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Updated this week