xiaoqunwang-lab / AllendiggerLinks
AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Allen brain atlas
☆14Updated 2 years ago
Alternatives and similar repositories for Allendigger
Users that are interested in Allendigger are comparing it to the libraries listed below
Sorting:
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆92Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- ☆27Updated last year
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- Spatial analysis of FISH data☆34Updated 7 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 6 months ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Interactive visualization of spatial omics data☆73Updated last week
- Package for the analysis of Transcripts outside segmented cells in ST data☆23Updated last week
- ☆85Updated last week
- ☆53Updated 4 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 8 months ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- COmmon COordinate FRAMEwork in R☆37Updated 5 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated this week
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Updated 4 years ago
- Python API and Jupyter widget for Vitessce☆60Updated last month
- Optimal gating strategies for flow and mass cytometry.☆16Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated last week
- A plugin to visualise 3D spatial single cell omics☆20Updated 2 months ago
- ☆18Updated last year