xiaoqunwang-lab / AllendiggerLinks
AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Allen brain atlas
☆14Updated 2 years ago
Alternatives and similar repositories for Allendigger
Users that are interested in Allendigger are comparing it to the libraries listed below
Sorting:
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆79Updated last week
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆28Updated 10 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆85Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last month
- ☆27Updated 9 months ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- Analysis of TrackMate XML outputs in R☆14Updated 3 weeks ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Spatial analysis of FISH data☆31Updated 2 months ago
- Interactive visualization of spatial omics data☆64Updated last week
- Example vignette for dotdotdot software☆18Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 4 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated last month
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- ☆65Updated last week
- ☆18Updated last year
- ABBA, controlled from python☆15Updated 4 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated last month
- QuPath extension to interactively align images☆24Updated last month
- ☆52Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Python API and Jupyter widget for Vitessce☆50Updated last week
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 3 months ago