Simple terminal alignment viewer
☆90Apr 23, 2026Updated 5 months ago
Alternatives and similar repositories for alen
Users that are interested in alen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- A Gene Finder framework for Julia.☆15Jan 16, 2026Updated 8 months ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 2 weeks ago
- A console-based alignment viewer☆122Apr 21, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated last year
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- bioinformatics toolkit in rust☆109Aug 16, 2026Updated last month
- Biological file format specimens for testing packages, and functions to assist in testing.☆16Nov 18, 2025Updated 10 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- ☆12Jan 27, 2025Updated last year
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 11 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Sep 24, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Sep 1, 2026Updated last month
- Wrapper to protein secondary structure calculation packages☆13Aug 25, 2026Updated last month
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 9 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Updated this week
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 2 months ago
- Complete assemblies of non-human primate genomes☆63May 20, 2025Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆357Jul 27, 2026Updated 2 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Updated this week
- Find your bytes. Fast.☆26Jan 28, 2026Updated 8 months ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 6 months ago
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 10 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated 3 weeks ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 4 months ago