Simple terminal alignment viewer
☆87Feb 2, 2026Updated last month
Alternatives and similar repositories for alen
Users that are interested in alen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated last week
- A Gene Finder framework for Julia.☆16Jan 16, 2026Updated 2 months ago
- A console-based alignment viewer☆119Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Biological file format specimens for testing packages, and functions to assist in testing.☆15Nov 18, 2025Updated 4 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 5 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- ☆12Jan 27, 2025Updated last year
- ☆10Mar 21, 2026Updated last week
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- Wrapper to protein secondary structure calculation packages☆13Apr 3, 2025Updated 11 months ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Mar 10, 2026Updated 2 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Mar 20, 2026Updated last week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 8 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Complete assemblies of non-human primate genomes☆58May 20, 2025Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- Find your bytes. Fast.☆26Jan 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆122Mar 20, 2026Updated last week
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 8 months ago
- A pairwise sequence aligner written in Rust☆152Jan 27, 2026Updated 2 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 3 weeks ago