mfumagalli / CopenhagenLinks
Analysis of genotyping and next-generation sequencing data in medical and population genetics
☆23Updated 3 years ago
Alternatives and similar repositories for Copenhagen
Users that are interested in Copenhagen are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆27Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- ☆44Updated 8 months ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 3 weeks ago
- Tools and Utilities for msmc and msmc2☆49Updated 3 months ago
- Infer demographic history with the Moran model☆49Updated 5 months ago
- ☆11Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆55Updated 4 months ago
- Short scripts for converting genetic data between formats.☆29Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- ☆17Updated 9 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12Updated 5 months ago
- ☆13Updated 4 years ago
- Genetic maps in autopolyploids☆31Updated 5 months ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 7 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last week
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆25Updated last year