mfumagalli / CopenhagenLinks
Analysis of genotyping and next-generation sequencing data in medical and population genetics
☆23Updated 3 years ago
Alternatives and similar repositories for Copenhagen
Users that are interested in Copenhagen are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆62Updated 10 months ago
- ☆44Updated 6 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated last month
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- ☆24Updated 8 years ago
- ☆11Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- ☆13Updated 4 years ago
- ☆15Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Genetic maps in autopolyploids☆30Updated 3 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 4 months ago
- ☆17Updated 9 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 5 years ago