mfumagalli / Copenhagen
Analysis of genotyping and next-generation sequencing data in medical and population genetics
☆23Updated 2 years ago
Alternatives and similar repositories for Copenhagen:
Users that are interested in Copenhagen are comparing it to the libraries listed below
- ☆13Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Repository for speciation genomics website☆24Updated 5 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 9 months ago
- ☆29Updated last week
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Software for ancestry estimation in unrelated individuals☆15Updated this week
- Tools and Utilities for msmc and msmc2☆46Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last week
- ☆43Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆23Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆14Updated last month
- Sampling and inference of genealogies with recombination☆28Updated 3 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆18Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- GONE: Scripts, programs and an example data set☆43Updated last year
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 5 months ago
- ☆17Updated 9 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆31Updated 9 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆34Updated last year
- Sex assignment through coverage☆17Updated 10 months ago