mohanbolisetty / CellViewLinks
Simple App to visualize single cell datasets
☆20Updated 7 years ago
Alternatives and similar repositories for CellView
Users that are interested in CellView are comparing it to the libraries listed below
Sorting:
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- Mouse cell atlas☆59Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆49Updated 7 years ago
- An R package for handling and analysing imaging mass cytometry data☆26Updated last week
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆37Updated 8 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆53Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated 3 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆41Updated 4 years ago