SCRAT: Single-Cell Regulome Analysis Tool
☆15Apr 4, 2020Updated 5 years ago
Alternatives and similar repositories for SCRAT
Users that are interested in SCRAT are comparing it to the libraries listed below
Sorting:
- TSCAN: Tools for Single-Cell ANalysis☆42Sep 8, 2022Updated 3 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Aug 27, 2024Updated last year
- ☆17Nov 13, 2021Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 6 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Jul 8, 2025Updated 7 months ago
- epigenome analysis to rank transcription factors☆32Feb 2, 2023Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Sep 30, 2025Updated 5 months ago
- ☆10Dec 17, 2019Updated 6 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago
- A package for the analysis of Imaging Mass Cytometry data☆14Jan 21, 2026Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Feb 23, 2026Updated last week
- R package for analysing diversity dynamics with fossil occurrences☆12Dec 1, 2025Updated 3 months ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆16Apr 21, 2023Updated 2 years ago
- ☆10Oct 6, 2017Updated 8 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- ☆97Jan 27, 2021Updated 5 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆45Apr 12, 2023Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 10 years ago
- R toolkit for the analysis of single-cell chromatin data☆406Jan 20, 2026Updated last month
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 9 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆10Sep 29, 2019Updated 6 years ago
- ☆14Dec 18, 2025Updated 2 months ago
- An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed tissue imaging☆11May 18, 2022Updated 3 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated last year
- Semiautomated layout of RNA tertiary structure diagrams☆14Feb 26, 2025Updated last year
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 5 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago