biovoxxel / bv3dboxLinks
The known BioVoxxel Toolbox functions now improved for 2D and 3D images
☆16Updated 3 months ago
Alternatives and similar repositories for bv3dbox
Users that are interested in bv3dbox are comparing it to the libraries listed below
Sorting:
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 10 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 10 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 11 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 months ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- python tools for BigDataViewer☆22Updated 9 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated this week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆51Updated 5 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Process images using SimpleITK in napari☆22Updated 5 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated 2 weeks ago
- ☆39Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago