A tool for manual pointwise deformable registration using bigdataviewer.
☆36Apr 29, 2026Updated this week
Alternatives and similar repositories for bigwarp
Users that are interested in bigwarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- ImgLib2-based viewer for registered SPIM stacks and more☆42Mar 20, 2026Updated last month
- Tools for distributed alignment of massive images☆95Apr 22, 2026Updated last week
- ☆21Apr 28, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Sep 13, 2025Updated 7 months ago
- ☆42Updated this week
- ☆10Mar 4, 2020Updated 6 years ago
- Simple MATLAB toolbox for deep learning network: Version 1.0.3☆16Apr 16, 2019Updated 7 years ago
- Fiji plugins for starting BigDataViewer and exporting data.☆22Sep 19, 2025Updated 7 months ago
- Simple codes to numerically simulate laser/ultrasound-induced inertial cavitation bubble dynamics in soft materials☆13Jan 7, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Java implementation of the Zarr Specification☆19Updated this week
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Apr 7, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multiscale Image Restoration for fluorescence microscopy☆10Jun 17, 2023Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆61Updated this week
- Supplement to Solid Earth manuscript se-2019-104☆16Jun 13, 2019Updated 6 years ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆28Nov 17, 2025Updated 5 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Oct 21, 2022Updated 3 years ago
- A MATLAB package for double frame and time resolved Particle Tracking Velocimetry☆16Feb 11, 2020Updated 6 years ago
- Source code for the paper "Multi-dimensional Sparse Super-resolution"☆17Jul 2, 2018Updated 7 years ago
- Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics☆20Feb 25, 2026Updated 2 months ago
- SerialTrack particle tracking algorithm☆16Oct 25, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Jan 26, 2021Updated 5 years ago
- Generates simulated confocal data from a ground truth signal☆11Aug 16, 2022Updated 3 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- Implementation of 3d non-separable convolution using CUDA & FFT Convolution☆20Jan 15, 2019Updated 7 years ago
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- BIRDS plug-in on Fiji and attached jar package☆22Oct 7, 2021Updated 4 years ago
- GPU-accelerated Image Processing library for C++☆16Apr 27, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Oct 24, 2025Updated 6 months ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆26Jun 13, 2024Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated last week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Apr 13, 2026Updated 3 weeks ago
- Shell scripts for scientific projects written in Java☆17Nov 26, 2025Updated 5 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆238Updated this week