simple standalone BigDataViewer for multiple N5 (or HDF5) datasets
☆12Mar 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for n5-utils
Users that are interested in n5-utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Mar 11, 2026Updated last week
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Updated this week
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Jun 13, 2024Updated last year
- ☆112Updated this week
- ☆14Oct 24, 2025Updated 5 months ago
- MultiModal Big Image Data Sharing and Exploration☆19Jan 13, 2023Updated 3 years ago
- Shell scripts for scientific projects written in Java☆17Nov 26, 2025Updated 3 months ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- ☆21Mar 11, 2026Updated last week
- Algorithmic and Utility Extensions for the Imaris Program☆20Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ☆41Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Mar 12, 2026Updated last week
- ImageJ convenience layer for N5☆19Mar 12, 2026Updated last week
- StarDist plugin for ImageJ☆30May 9, 2022Updated 3 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Feb 18, 2025Updated last year
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆81Feb 3, 2026Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated last week
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 5 months ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Feb 6, 2026Updated last month
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Official Python implementation of the 'Sparse deconvolution'-v0.3.0☆56Feb 8, 2024Updated 2 years ago
- ☆11Sep 19, 2015Updated 10 years ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- ☆24Sep 13, 2025Updated 6 months ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆74Feb 26, 2026Updated 3 weeks ago
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆17Mar 15, 2026Updated last week
- Java implementation of the Zarr Specification☆18Updated this week
- ImgLib2-based viewer for registered SPIM stacks and more☆42Mar 4, 2026Updated 2 weeks ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 9 months ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆32Updated this week
- ☆14Jan 26, 2021Updated 5 years ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆49Feb 2, 2026Updated last month