saalfeldlab / n5-utilsLinks
simple standalone BigDataViewer for multiple N5 (or HDF5) datasets
☆12Updated 7 months ago
Alternatives and similar repositories for n5-utils
Users that are interested in n5-utils are comparing it to the libraries listed below
Sorting:
- python tools for BigDataViewer☆22Updated 10 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 6 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ☆13Updated 5 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- ☆13Updated 5 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated last month
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- ImageJ convenience layer for N5☆17Updated 2 months ago
- my first baby steps with Napari☆10Updated 5 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Updated 6 months ago
- Running compute-intense parts of BigStitcher distributed☆27Updated this week
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- ☆19Updated 5 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- Napari gaming☆17Updated 3 years ago
- 1d plotting in napari-based canvas.☆26Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated last month
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆88Updated 2 weeks ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 3 weeks ago