haesleinhuepf / imagejmacromarkdown
Generate markdown notebooks from ImageJ Macro
☆24Updated 3 years ago
Alternatives and similar repositories for imagejmacromarkdown:
Users that are interested in imagejmacromarkdown are comparing it to the libraries listed below
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 4 months ago
- ☆19Updated 3 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated last month
- ☆10Updated 2 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Lectures for a napari training course☆50Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- ☆46Updated 4 months ago
- Denoising via adaptive binning.☆12Updated 7 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆14Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆24Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- ☆17Updated 2 years ago
- quantixed FIJI update site☆16Updated last month
- ImageJ convenience layer for N5☆16Updated this week
- ☆14Updated last year
- ☆12Updated 4 years ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 4 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year