Generate markdown notebooks from ImageJ Macro
☆27Mar 17, 2021Updated 5 years ago
Alternatives and similar repositories for imagejmacromarkdown
Users that are interested in imagejmacromarkdown are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of demonstration materials for MorphoLibJ.☆12Jan 12, 2023Updated 3 years ago
- ☆10Nov 29, 2024Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆37Feb 1, 2026Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Fiji plugin for Curvature Analysis.☆13Aug 17, 2020Updated 5 years ago
- ☆24Sep 13, 2025Updated 7 months ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- ImageJ plugins to run ilastik workflows☆27Mar 9, 2026Updated last month
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- ☆42Apr 1, 2026Updated 2 weeks ago
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated last year
- ☆15Mar 10, 2020Updated 6 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Various parts made for fluorescence microscopy + optics work☆17Jul 22, 2019Updated 6 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆73Apr 6, 2026Updated last week
- Collection of mathematical morphology methods and plugins for ImageJ☆119Feb 19, 2026Updated last month
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc☆15Nov 16, 2022Updated 3 years ago
- This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two…☆13Apr 27, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Friendly base POM for all SciJava-based software☆28Mar 19, 2026Updated last month
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- A hub to start the next generation of Microscope Control Software☆60Jan 7, 2021Updated 5 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Apr 9, 2020Updated 6 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆56May 1, 2025Updated 11 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Mar 26, 2026Updated 3 weeks ago
- AutoTx - an intelligent background file transfer service for Windows.☆28Mar 25, 2026Updated 3 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 7 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- ImageJ library to detect and analyse connected components (blobs) in binary images☆10May 24, 2024Updated last year
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 2 months ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆74Feb 26, 2026Updated last month
- ImageJ convenience layer for N5☆19Updated this week