haesleinhuepf / imagejmacromarkdownLinks
Generate markdown notebooks from ImageJ Macro
☆25Updated 4 years ago
Alternatives and similar repositories for imagejmacromarkdown
Users that are interested in imagejmacromarkdown are comparing it to the libraries listed below
Sorting:
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 10 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Lectures for a napari training course☆50Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆51Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- ☆20Updated 4 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 3 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 11 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 10 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- ☆10Updated 8 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 3 weeks ago
- Image correction software for chromatic shifts in fluorescence microscopic images☆25Updated 2 months ago
- ☆15Updated 2 years ago
- ☆13Updated 5 years ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- ImageJ macros and scripts written at the imaging facility MRI☆35Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 3 weeks ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- StarDist plugin for napari☆40Updated last year