A first intoduction to scripting in Fiji using the ImageJ Macro language.
☆26Sep 26, 2024Updated last year
Alternatives and similar repositories for ImageJMacro_Introduction
Users that are interested in ImageJMacro_Introduction are comparing it to the libraries listed below
Sorting:
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Jan 12, 2023Updated 3 years ago
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- GPU-accelerated Image Processing library for Python☆53Updated this week
- ☆41Feb 13, 2026Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 11, 2026Updated 2 weeks ago
- ☆16Jul 30, 2024Updated last year
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 10 months ago
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 3 years ago
- ImageJ plugins to run ilastik workflows☆26Feb 10, 2026Updated 2 weeks ago
- ☆51May 1, 2025Updated 10 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- ☆20Updated this week
- Illustrations created by Henning Falk for the Zarr community☆44Jan 29, 2025Updated last year
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆130Aug 7, 2025Updated 6 months ago
- CUDA-accelerated reconstruction for 3D-structured-illumination☆12Nov 24, 2025Updated 3 months ago
- Materials for a Python Beginner's Course. First given at the Royal Society of Biology. Designed and delivered by Chas Nelson and Mikolaj …☆44Oct 26, 2023Updated 2 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 3 weeks ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated last month
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- ☆12Feb 23, 2026Updated last week
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- ☆10Nov 29, 2024Updated last year
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 3 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated 10 months ago
- ☆14Jan 26, 2021Updated 5 years ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated 9 months ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Jan 14, 2026Updated last month
- Generate markdown notebooks from ImageJ Macro☆26Mar 17, 2021Updated 4 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆31Sep 14, 2024Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated this week