ahklemm / ImageJMacro_Introduction
A first intoduction to scripting in Fiji using the ImageJ Macro language.
☆24Updated 7 months ago
Alternatives and similar repositories for ImageJMacro_Introduction
Users that are interested in ImageJMacro_Introduction are comparing it to the libraries listed below
Sorting:
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 7 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- ☆19Updated 4 years ago
- StarDist plugin for ImageJ☆29Updated 3 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- MethodsJ2☆14Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 weeks ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- ☆12Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated 11 months ago
- QuPath extension for Cellsparse☆18Updated last week
- ☆11Updated last month
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated 2 weeks ago
- Lectures for a napari training course☆50Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated 3 weeks ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆36Updated 9 months ago
- StarDist plugin for napari☆38Updated 8 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago