saalfeldlab / paintera

Related projects ⓘ

Alternatives and complementary repositories for paintera

• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆32Updated last month
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆68Updated 2 weeks ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆28Updated this week
• bigdataviewer / bigdataviewer-core
  ImgLib2-based viewer for registered SPIM stacks and more
  ☆35Updated 2 weeks ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• mobie / mobie-viewer-fiji
  ☆33Updated this week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 weeks ago
• imagej / example-imagej2-command
  Simple Maven project for an ImageJ2 command
  ☆30Updated 2 years ago
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆48Updated 4 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆33Updated 2 weeks ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆56Updated this week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆42Updated this week
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆27Updated 2 years ago
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆18Updated this week
• bigdataviewer / bigdataviewer_fiji
  Fiji plugins for starting BigDataViewer and exporting data.
  ☆21Updated last month
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆24Updated 2 years ago
• cgohlke / roifile
  Read and write ImageJ ROI format
  ☆65Updated 2 months ago
• napari / napari-animation
  A napari plugin for making animations
  ☆79Updated 2 months ago
• bioimage-io / JDLL
  The Java library to run Deep Learning models
  ☆29Updated this week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆75Updated last week
• ilastik / ilastik4ij
  ImageJ plugins to run ilastik workflows
  ☆23Updated 4 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆48Updated last month
• bigdataviewer / bigdataviewer-vistools
  Helpers to use BigDataViewer as a quick visualization tool in other projects.
  ☆25Updated 5 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆36Updated 2 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆80Updated this week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆53Updated 3 weeks ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆48Updated last week
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆27Updated 3 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago