NFDI4BIOIMAGE / trainingLinks
☆14Updated this week
Alternatives and similar repositories for training
Users that are interested in training are comparing it to the libraries listed below
Sorting:
- A 3D interactivity toolbox for napari☆34Updated last month
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆16Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆16Updated 2 weeks ago
- MethodsJ2☆14Updated 3 years ago
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- ☆36Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- python tools for BigDataViewer☆22Updated 5 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- ☆23Updated 3 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- A fully scalable robust image feature extraction library.☆24Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last month
- ilastik plugin for napari☆14Updated last year
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆14Updated last week
- Create web-based OME-Zarr galleries☆17Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 6 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- ☆29Updated last year
- ☆17Updated last week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 8 months ago