☆15Oct 29, 2026Updated this week
Alternatives and similar repositories for training
Users that are interested in training are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- A napari plugin to view and edit layer metadata☆14Oct 21, 2026Updated last week
- Solve bio-image analysis puzzles!☆13Apr 26, 2025Updated last year
- An OMERO.web app for sharing data and prepare data for web download.☆12Sep 18, 2026Updated last month
- ☆11Jul 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dataframe-agnostic Zarr Storage powered by Narwhals☆10Dec 1, 2025Updated 11 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆24Oct 21, 2026Updated last week
- Maven project to easily connect to OMERO.☆11Oct 1, 2026Updated 3 weeks ago
- A plugin for exporting RDF from OMERO☆16Feb 27, 2026Updated 8 months ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- ☆15Sep 4, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 4 months ago
- An OpenSeadragon tile source for the OME-Zarr bioimage file format☆13Sep 26, 2026Updated last month
- Scientific Dataset Quality Control and Data Exploration Tool☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆26Jun 3, 2026Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 10 months ago
- A BioIO reader plugin for reading Zarr files in the OME format.☆14Sep 8, 2026Updated last month
- Prototype OMERO.parade implementation using crossfilter.js☆12Feb 14, 2026Updated 8 months ago
- OMERO.web plugin for the Vitessce multimodal data viewer.☆14Jul 29, 2026Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- Core OMERO Scripts☆15Oct 23, 2026Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated 3 weeks ago
- ☆17Aug 3, 2026Updated 2 months ago
- napari plugin to open CZI image files and their metadata☆17Oct 20, 2026Updated last week
- OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/☆10Aug 10, 2026Updated 2 months ago
- ☆16Jul 21, 2023Updated 3 years ago
- Scientific image analysis resources and software tools.☆49Oct 9, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silic…☆26Aug 9, 2026Updated 2 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- A list of awesome bioimage analysis challenges☆10Feb 1, 2022Updated 4 years ago
- ☆22Aug 17, 2023Updated 3 years ago
- ☆39Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆58May 1, 2025Updated last year
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week