bioimage-io / bioimage-io-resourcesLinks
Model repository for bioimage.io
☆17Updated last year
Alternatives and similar repositories for bioimage-io-resources
Users that are interested in bioimage-io-resources are comparing it to the libraries listed below
Sorting:
- Easily read and write ome-tiff images in python☆27Updated last year
- ☆22Updated 4 years ago
- ☆37Updated last month
- Read and write life sciences file formats☆140Updated last month
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 5 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 2 months ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆34Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- Specification for the bioimage.io model description file.☆21Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆94Updated last month
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 2 weeks ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 9 months ago
- Python image segmentation plugin☆31Updated 4 years ago
- StarDist plugin for napari☆38Updated 10 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆135Updated last month
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last week
- Cookiecutter for napari plugins☆70Updated 8 months ago
- native Python dataclasses for the OME data model☆57Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week