Alternatives and similar repositories for MethodsJ2

Users that are interested in MethodsJ2 are comparing it to the libraries listed below

• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 9 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 2 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆18Updated 4 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆17Updated last week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated last week
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 11 months ago
• mobie / mobie-viewer-fiji
  ☆37Updated 3 weeks ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 9 months ago
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆17Updated last month
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆24Updated 5 months ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆37Updated 3 months ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆46Updated last week
• haesleinhuepf / devbio-napari
  ☆51Updated 3 months ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆17Updated 2 weeks ago
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆18Updated last week
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 3 years ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆51Updated 3 months ago
• BIOP / ijp-kheops
  ☆19Updated 3 weeks ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆16Updated 2 years ago
• Kapoorlabs-CAPED / vollseg-napari
  Napari plugin for vollseg
  ☆15Updated last month
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆24Updated 2 years ago
• kephale / napari-stable-diffusion
  A stable diffusion demo for napari
  ☆11Updated last year
• stardist / stardist-napari
  StarDist plugin for napari
  ☆40Updated last year
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆38Updated 3 weeks ago
• GuignardLab / tapenade
  ☆12Updated last month
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆80Updated this week