ABIF-McGill / MethodsJ2
MethodsJ2
☆14Updated 3 years ago
Alternatives and similar repositories for MethodsJ2
Users that are interested in MethodsJ2 are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆16Updated last month
- ☆35Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆36Updated 9 months ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated this week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last week
- ☆23Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 weeks ago
- Browse your OMERO database from within napari.☆36Updated last week
- ☆23Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- An Ilastik-like interactive pixel classifier.☆16Updated 8 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆13Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated last week