MethodsJ2
☆14May 6, 2022Updated 3 years ago
Alternatives and similar repositories for MethodsJ2
Users that are interested in MethodsJ2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 16, 2026Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆37Feb 1, 2026Updated last month
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆13Jan 9, 2025Updated last year
- A napari plugin for zarr backed OME-NGFF images☆46Mar 17, 2026Updated last week
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆25Mar 17, 2026Updated last week
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- ☆14Apr 17, 2019Updated 6 years ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 4 months ago
- A Board Game to teach co-localization analysis☆14Nov 1, 2024Updated last year
- ☆41Updated this week
- A minimal Zarr image viewer based on Viv.☆186Mar 17, 2026Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- Generate markdown notebooks from ImageJ Macro☆26Mar 17, 2021Updated 5 years ago
- GPU-accelerated Image Processing library for Python☆55Updated this week
- A collection of LUTs for ImageJ/Fiji☆74Jun 20, 2020Updated 5 years ago
- Stitching of large tiled datasets☆22Feb 13, 2026Updated last month
- Model repository for bioimage.io☆17Aug 7, 2023Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 5 months ago
- an ImageJ toolset for EM image analysis☆14Jun 25, 2024Updated last year
- Reference implementation of the Graph Exchange File Format☆37Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆47Updated this week
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Sep 26, 2024Updated last year
- ☆11Nov 24, 2025Updated 4 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated 3 weeks ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 5 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Jul 22, 2024Updated last year
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 6 months ago
- An introduction to OME-Zarr for big bioimaging data☆24Mar 16, 2026Updated last week
- ☆21Mar 12, 2026Updated last week
- Python bindings for MMCore, Micro-Manager's device control layer☆35Mar 10, 2026Updated 2 weeks ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆15Jan 2, 2018Updated 8 years ago
- Illustrations created by Henning Falk for the Zarr community☆45Jan 29, 2025Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year