Alternatives and similar repositories for reseek

Users that are interested in reseek are comparing it to the libraries listed below

• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆35Updated 3 weeks ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 4 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated last month
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 3 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 11 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆84Updated 4 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 4 months ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• Merck / bgc-pipeline
  ☆11Updated 9 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 2 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 3 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated 3 months ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆169Updated last week
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆56Updated 5 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆199Updated 2 months ago
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆75Updated 3 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 3 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆58Updated 4 years ago
• soedinglab / MMseqs
  ☆14Updated 9 years ago
• tlawrence3 / amPEPpy
  ☆28Updated last year
• inbalpaz / CLANS
  CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …
  ☆20Updated 9 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆21Updated 6 months ago
• nf-core / proteinfamilies
  Generation and update of protein families
  ☆19Updated 3 weeks ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆52Updated 5 months ago