rcedgar / reseekLinks
Protein structure alignment and search algorithm
☆70Updated this week
Alternatives and similar repositories for reseek
Users that are interested in reseek are comparing it to the libraries listed below
Sorting:
- Software for predicting translation initiation rates in bacteria☆29Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- UniProt Id Mapping through API☆34Updated 10 months ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆147Updated 8 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- snakemake pipeline for creating trees from sequence sets☆85Updated 3 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 5 months ago
- ☆11Updated 8 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 5 months ago
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Cython bindings and Python interface to HMMER3.☆146Updated last week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆199Updated last month
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆19Updated 8 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Logan Unitigs and Contigs☆145Updated 3 weeks ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated 2 weeks ago
- Generation and update of protein families☆18Updated this week
- BGC Detection and Classification Using Deep Learning☆152Updated last year
- ☆27Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆52Updated 5 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago