rcedgar / reseekLinks
Protein structure alignment and search algorithm
☆73Updated this week
Alternatives and similar repositories for reseek
Users that are interested in reseek are comparing it to the libraries listed below
Sorting:
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- UniProt Id Mapping through API☆35Updated 2 weeks ago
- Software for predicting translation initiation rates in bacteria☆29Updated 2 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 5 months ago
- Discovery of conserved gene clusters in multiple genomes☆97Updated 4 months ago
- snakemake pipeline for creating trees from sequence sets☆86Updated 2 weeks ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆154Updated 10 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 6 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 weeks ago
- ☆11Updated 10 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 6 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- Logan Unitigs and Contigs☆171Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated 2 months ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆21Updated 10 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- Cython bindings and Python interface to HMMER3.☆148Updated last week
- sensitive and precise assembly of short sequencing reads☆161Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Multi-class signal peptide prediction and structure decoding model.☆95Updated 8 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆114Updated 11 months ago
- Protein Sequence Annotation with Language Models☆24Updated 4 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆201Updated 2 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated last month
- ☆28Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆61Updated 5 years ago