Alternatives and similar repositories for mixOmics:

Users that are interested in mixOmics are comparing it to the libraries listed below

• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆226Updated 3 weeks ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆396Updated last week
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆171Updated 2 weeks ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆164Updated last month
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆243Updated last week
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆169Updated 4 months ago
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆212Updated 6 months ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated 2 years ago
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆427Updated 10 months ago
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆108Updated last week
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆181Updated 2 months ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆160Updated 9 months ago
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆199Updated 9 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆258Updated 3 months ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆123Updated 2 weeks ago
• bioFAM / MOFA2
  Multi-Omics Factor Analysis
  ☆327Updated 9 months ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆190Updated last year
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆233Updated last week
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆187Updated last week
• egeulgen / pathfindR
  pathfindR: Enrichment Analysis Utilizing Active Subnetworks
  ☆188Updated 2 months ago
• xia-lab / MetaboAnalystR
  R package for MetaboAnalyst
  ☆341Updated this week
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆84Updated 5 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆135Updated 5 months ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆308Updated last year
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆121Updated last month
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆164Updated 4 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆239Updated last month
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆114Updated last week
• raivokolde / pheatmap
  Pretty heatmaps
  ☆250Updated last year