kstawiski / OmicSelectorLinks
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
☆34Updated 2 months ago
Alternatives and similar repositories for OmicSelector
Users that are interested in OmicSelector are comparing it to the libraries listed below
Sorting:
- Multi-omics data normalisation, model fitting and visualisation.☆28Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- DEAPP shiny App☆30Updated 3 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 5 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Updated last year
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19Updated 5 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Updated last year
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- Template for building a bioconductor workshop package using github actions☆21Updated 4 months ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 6 years ago
- ☆22Updated 5 years ago
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆38Updated 5 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- ☆25Updated 4 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Interactive tool for Phosphoproteomics☆13Updated 5 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Cancer Dependency Map package☆30Updated last year
- ☆16Updated 5 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Updated 2 months ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated 2 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆14Updated 11 months ago
- R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 4 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- Single sample network reconstruction in R☆23Updated 5 years ago