jeffsocal / tidyproteomicsLinks
An S3 data object and framework for common quantitative proteomic analyses
☆44Updated 2 months ago
Alternatives and similar repositories for tidyproteomics
Users that are interested in tidyproteomics are comparing it to the libraries listed below
Sorting:
- R package for analysing proteomics data☆49Updated 2 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆111Updated last week
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- An R interface to enrichR☆91Updated 6 months ago
- 🧬 Gene analysis toolkit based on R☆57Updated 7 months ago
- Easily install and load packages from the tidyomcis ecosystem☆68Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- ☆27Updated 4 years ago
- Simplify functional enrichment results☆117Updated 11 months ago
- A General Framework for Consensus Partitioning☆63Updated 6 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated 10 months ago
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- DEP package☆28Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- An r package for proteomics data Analysis, developed from DEP.☆30Updated 5 months ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- An r package that works as a wrapper to homologene☆46Updated last year
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Differential Gene Correlation Analysis☆45Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Updated last month
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated last week
- GLASS consortium☆40Updated 5 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated 4 months ago